EY753275

Overview
NameEY753275
Unique NameEY753275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY753275 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.917e-25
Identity = 54/107 (50.47%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:  101 MAKSXXXXXXXXXXXXSMLQTMVVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 421
            MAKS             MLQTMV+A++G   + +  K YGPG++K  QCP +CD RC +TQY K               VPPGYYGNK VC CYNNWKT+EGGPKCP
Sbjct:    1 MAKSYGAIFLLTLIVLFMLQTMVMASSGSNVK-WSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106
[Close]
BLAST of EY753275 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 34/66 (51.52%), Postives = 37/66 (56.06%), Query Frame = 2 
Query:  224 GTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 421
            G +    C  KC  RCS+T Y+KP              VP G YGNK  CPCYNNWKTK GGPKCP
Sbjct:   47 GRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112
[Close]
BLAST of EY753275 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.707e-12
Identity = 31/68 (45.59%), Postives = 37/68 (54.41%), Query Frame = 2 
Query:  218 GPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 421
            G   ++   C  +C  RCS T ++KP              VP G YGNK  CPCYNNWKT+EG PKCP
Sbjct:   29 GYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96
The following BLAST results are available for this feature:
BLAST of EY753275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GASA4_ARATH3.917e-2550.47Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GAST1_SOLLC1.824e-1451.52Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC1.707e-1245.59Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-083-H09-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753275 ID=EY753275; Name=EY753275; organism=Citrus sinensis; type=EST; length=878bp
CACGCGTCCGACAATTTCTTGTTTCTCTCTTGCTCTTGTTTCGAGTCCTG
TTCCACTTTAAGAGGGGTTTGTTTGTTAATTTGTAGCAAGTTTAAGGGCC
ATGGCTAAATCGTTTGCCATCTTCATCTTGGCTGCTCTCTTTGCCATCTC
CATGCTTCAAACAATGGTCGTGGCAGCAAATGGGCAGGGAGGTCGGCACT
ATGATTCGAAACATTACGGACCTGGGACTGTCAAGAGCTACCAATGCCCT
GGAAAATGTGATACGAGATGCAGCCAGACCCAATACCGCAAGCCATGCCT
ATTCTTTTGCAACAAGTGCTGCAAGAAGTGTCTGTGTGTGCCCCCTGGCT
ACTATGGCAACAAGGCTGTGTGCCCTTGCTACAACAATTGGAAGACCAAG
GAAGGAGGACCTAAATGCCCTTAAGCAGTCAGCTCTTCGCTTTCAAAATC
TCTTCCTCTTTATCGTCACCTATTTTAAGTTTCGTTTTGTTGTATTATCA
TCACAGCCACTGTGATGTTGTTCGACTATTACTTACTAACTTCAAAGTTC
AATACGCACCGGCCAGCCCCTTTTTCCTATATGTGGGGGTTTCTTTTGAT
GTAAGTCACTCCTTGAAGATAAAGGATTAACCTCCCTCAAATGAAAAATG
GCTAAACTAATAAAGAATAATCAAATTAAAAAGGCCAATGAAATTTCTTA
TTTTCTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCAGCC
TCAAAAAAGATCCAAACTTACTAAACACGAACATCACAAATTAAAACTCT
CTCTATAAGGAACACCCATAATATTCAATTCCACGGGACCCTCACTTTTT
ACACAGACCTTGAAAATAGGGAAAAACC
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