FE659298

Overview
NameFE659298
Unique NameFE659298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.894e-18
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLI--EEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            ENA+A +L LSKH  GK  I   G LK+++++L  G   E R  +A+ LFYL+SV+ Y  LIGE P AIP L+N++  ++  D  K +A++A+ GLL+   NH +VL A
Sbjct:  448 ENAMAGILNLSKHVTGKSKIAGEG-LKILVEILNEGAKTETRLYSASALFYLSSVEDYSRLIGENPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLLMQSDNHWRVLAA 555          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.206e-16
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIV--ESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIE--EGTDCGKINAVVAIFGLLLSQ-GNHRKVLDA 325
            ENA+A ++ LSK   GK  IV  + GGL+LI++VL  G   E+RQ AAA LFYL+S+  Y  LIGE   AIP LV +++  +  D  K NA++AI  LL++Q  NH ++L A
Sbjct:  434 ENAMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLNDGARRESRQYAAAALFYLSSLGDYSRLIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQPDNHWRILAA 545          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            E+AV ALL LS H   K  I+ SG +  I+ VLK+G S+EAR+ AAATLF L+ +  Y+  IG    AIP LV L+ EG+  GK +A  A+F L + QGN  + + A
Sbjct:  427 EHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIGGM-GAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRA 531          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            E+AV ALL LS H   K  I+ SG +  I+ VLK+G S+EAR+ AAATLF L+ +  Y+  IG    AIP LV L+ EG+  GK +A  A+F L + QGN  + + A
Sbjct:  427 EHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNG-SMEARENAAATLFSLSVIDEYKVTIGGM-GAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRA 531          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVL 319
            E++V ALL LS + G K  IV++G +  I++VLK+G S+EAR+ AAATLF L+ +   +  IG    AI  L++L+EEGT  GK +A  AIF L + QGN  + +
Sbjct:  405 EHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNG-SMEARENAAATLFSLSVIDENKVAIGAA-GAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAV 507          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            E++V ALL LS     K  IV +G +  I++VLK G S+EAR+ AAATLF L+ +   +  IG    AIPPLV L+ EGT  GK +A  A+F L + QGN  K + A
Sbjct:  412 EHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKG-SMEARENAAATLFSLSVIDENKVTIGAL-GAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRA 516          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    8 NAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            +AV  LL LS +   K +I ESG +  ++ VLK+G   EA+  +AATLF L+ ++ Y+  IGE   AI PLV+L+  G+  GK +A  A+F L +   N  KV++A
Sbjct:  482 DAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEA-GAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEA 586          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.801e-12
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            ENA+  +L LS +   K++I+ +G +  I++VL++G ++EAR+ AAATLF L+     + +IG +  AIP LV+L+E GT  GK +A  A+F L +  GN  + + A
Sbjct:  391 ENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAG-TMEARENAAATLFSLSLADENKIIIGGS-GAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRA 495          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGKKVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            ENAV ALL LS +   KK I ++G ++ ++ VL++G S EA++ +AATLF L+ ++  +  IG++  AI PLV+L+  GT  GK +A  A+F L + Q N   ++ +
Sbjct:  601 ENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENG-SSEAKENSAATLFSLSVIEENKIKIGQS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQS 705          
BLAST of FE659298 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.013e-12
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 ENAVAALLKLSKHTGGK-KVIVESGGLKLILKVLKSGLSLEARQIAAATLFYLTSVKGYR*LIGETPSAIPPLVNLIEEGTDCGKINAVVAIFGLLLSQGNHRKVLDA 325
            E+AV ++L LS     K K++  SG +  I+ VL+ G S+EAR+ AAATLF L+ +   +  IG    AIPPLV L+ EG+  GK +A  A+F L + QGN  K + A
Sbjct:  416 EHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKG-SMEARENAAATLFSLSVIDENKVTIGAA-GAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRA 521          
The following BLAST results are available for this feature:
BLAST of FE659298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PUB18_ARATH4.894e-1844.95U-box domain-containing protein 18 OS=Arabidopsis ... [more]
PUB19_ARATH1.206e-1647.32U-box domain-containing protein 19 OS=Arabidopsis ... [more]
SL11_ORYSJ1.128e-1446.73Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI1.128e-1446.73Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB14_ARATH3.283e-1445.71U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB13_ARATH4.288e-1446.73U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB2_ARATH8.086e-1341.51U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB11_ARATH1.801e-1240.19U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB4_ARATH2.353e-1240.19U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB12_ARATH4.013e-1243.52U-box domain-containing protein 12 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionA12 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659298 ID=FE659298; Name=FE659298; organism=Citrus sinensis; type=EST; length=327bp
ACTCGAGAATGCAGTAGCAGCTTTGCTGAAGCTGTCGAAGCATACTGGTG
GCAAGAAAGTGATAGTTGAAAGCGGGGGACTAAAATTGATCCTTAAAGTG
CTAAAATCCGGACTGAGCTTGGAAGCAAGGCAGATCGCGGCTGCAACATT
GTTTTACCTTACTTCTGTGAAGGGGTATCGATAATTGATAGGAGAAACAC
CGAGCGCAATCCCACCTCTTGTGAACCTGATTGAAGAGGGCACCGATTGT
GGCAAAATCAATGCTGTTGTTGCTATTTTCGGGCTGCTTTTGTCTCAAGG
AAACCATCGTAAAGTGCTTGATGCTGG
back to top