EY751722

Overview
NameEY751722
Unique NameEY751722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.899e-22
Identity = 60/98 (61.22%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  121 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAEN-------PS----GEWAGLC 381
            LGE MDLMTALQ+V++KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYVKLVK L             CAE+       PS    GEWAGLC
Sbjct:   20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKAL-------------CAEHNVHLVTVPSAKTLGEWAGLC 104          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.811e-19
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 1
Query:  127 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAENPSGEWAGLC 381
            E MD+ TAL++ +RKS A+GG+ RGLHE AK+IEK  AQLCVLAEDCNQPDYVKLVK L C          P A+   GEWAGLC
Sbjct:   23 EDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKAL-CADHSIKLLTVPSAKT-LGEWAGLC 105          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.089e-19
Identity = 54/85 (63.53%), Postives = 61/85 (71.76%), Query Frame = 1
Query:  127 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAENPSGEWAGLC 381
            E MDLMTAL++ LRK+ A+GG+ RGLHE AK+IEK  AQL VLAEDCNQPDYVKLVK L C          P A+   GEWAGLC
Sbjct:   23 EDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKAL-CADHEVRLLTVPSAKT-LGEWAGLC 105          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.706e-14
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  124 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAENPS-GEWAGLC 381
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ L   P      L    +N   GEW GLC
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEP---QINLIKVDDNKKLGEWVGLC 92          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.321e-13
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  124 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAEN-----------PSGEWAGLC 381
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ L             CAE+             GEW GLC
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEAL-------------CAEHQINLIKVDDNKKLGEWVGLC 92          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 4.321e-13
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  124 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAEN-----------PSGEWAGLC 381
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ L             CAE+             GEW GLC
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEAL-------------CAEHQINLIKVDDNKKLGEWVGLC 92          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.321e-13
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  124 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAEN-----------PSGEWAGLC 381
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ L             CAE+             GEW GLC
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEAL-------------CAEHQINLIKVDDNKKLGEWVGLC 92          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.321e-13
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  124 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAEN-----------PSGEWAGLC 381
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ L             CAE+             GEW GLC
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEAL-------------CAEHQINLIKVDDNKKLGEWVGLC 92          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 7.370e-13
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  124 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAENPS-GEWAGLC 381
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ L          L    +N   GEW GLC
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLA---EHQINLIKVDDNKKLGEWVGLC 92          
BLAST of EY751722 vs. ExPASy Swiss-Prot
Match: RS12_MOUSE (40S ribosomal protein S12 OS=Mus musculus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 7.370e-13
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  124 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKVLWC*P*P*AC*LFPCAENPS-GEWAGLC 381
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ L          L    +N   GEW GLC
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLA---EHQINLIKVDDNKKLGEWVGLC 92          
The following BLAST results are available for this feature:
BLAST of EY751722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RS12_HORVU3.899e-2261.2240S ribosomal protein S12 OS=Hordeum vulgare GN=RP... [more]
RS122_ARATH1.811e-1962.3540S ribosomal protein S12-2 OS=Arabidopsis thalian... [more]
RS121_ARATH3.089e-1963.5340S ribosomal protein S12-1 OS=Arabidopsis thalian... [more]
RS12_XENLA8.706e-1449.4340S ribosomal protein S12 OS=Xenopus laevis GN=rps... [more]
RS12_PIG4.321e-1344.3340S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P... [more]
RS12_HUMAN4.321e-1344.3340S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
RS12_CHICK4.321e-1344.3340S ribosomal protein S12 OS=Gallus gallus GN=RPS1... [more]
RS12_BOVIN4.321e-1344.3340S ribosomal protein S12 OS=Bos taurus GN=RPS12 P... [more]
RS12_RAT7.370e-1348.2840S ribosomal protein S12 OS=Rattus norvegicus GN=... [more]
RS12_MOUSE7.370e-1348.2840S ribosomal protein S12 OS=Mus musculus GN=Rps12... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-090-C07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY751722 ID=EY751722; Name=EY751722; organism=Citrus sinensis; type=EST; length=1025bp
CGCAGGCCAACGTCCGCTCTCCGCTAAGGGAAAAAAGAGTAAATATTTGA
ACAAACAACAAGAAGACAATGTCNTGGTGATGAGGCTGCCCCTGCTGTTG
AGACAGCACCTGCTGCCCCCCTTGGTGAGGCAATGGATCTGATGACGGCT
TTGCAGGTTGTGTTGAGAAAATCACTTGCTCACGGTGGTCTTGCTCGTGG
CCTTCATGAAGGTGCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTG
TATTGGCTGAAGATTGTAACCAACCTGACTATGTGAAATTGGTCAAGGTA
CTCTGGTGCTGACCATAACCGTAAGCTTGTTGATTGTTCCCCTGTGCAGA
GAATCCCTCGGGAGAGTGGGCTGGTTTGTGCGGACATATCCCTCTCATCC
AATATATTAAATCGGGGGGGGGGGGGGGGGGTGCTTAAAGAGTACAAAAT
ACTTCTAAGATATTCTTCTCCCCTCACACCCATACACACAAACAATAAAA
ACTAATCAATAATCTGAAAAAGAGAATTAAAAAAAACGTCATGTTACGCC
CACGAGATCCCCGTACGTATCAGAAAGGAATGAGCCCTAATACTCACTAA
GCCAACAAAGAACAACGATGAACAGACTCATCCAACCAGCGACATTGAAA
GAGGACAAGGTCATTTATATTTTGTAAGTAACATTTCCCAATCCTCTAGT
AATCACACATAATATGATGAATTTGCATAGTAGATATACTATAATGACAG
GTTCTCGAATTCTCTTCTGATATTTCAACAGTGACGTGCTTTGACTGGCT
TACACACAGGCGATACGTGATTATGCTGACGAACTGAAACTATTATGTAG
AATAGACAAAGTGATTACGAACCCAGACAAATATACAGATCGAAGGAAAT
GTAAGTATGAATAATCTAACATAAAGTATATGATTAAACCAAGAAACTAA
TCGGTTAATTAACAATCATACCATGAAAATGAATCCATTCAGAATAATAA
TAGATATATAATAAATAATAGCACA
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