FE659213

Overview
NameFE659213
Unique NameFE659213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13676 contig Csv1_Contig13676:1..320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FE659213 vs. ExPASy Swiss-Prot
Match: NDH_DICDI (Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 3 
Query:    3 VPYGLLVWSTGVGPSQFVKTLNLPKSPGGRIGVDERLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVTERQGKYLAELFN 248
            +PYGLLVWSTG+G    VK  +  K    RI VD+ LR  +  +VF+ GDCA    +      P  AQV  +   YLA+ FN
Sbjct:  293 IPYGLLVWSTGIGQHPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCANVENKN----YPPTAQVASQSAVYLAKEFN 370
The following BLAST results are available for this feature:
BLAST of FE659213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NDH_DICDI5.634e-1142.68Probable NADH dehydrogenase OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank description166 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659213 ID=FE659213; Name=FE659213; organism=Citrus sinensis; type=EST; length=320bp
ATGTGCCGTATGGGCTCTTGGTCTGGTCTACGGGAGTTGGTCCCTCTCAG
TTTGTGAAAACACTAAATCTCCCCAAGTCACCCGGTGGAAGGATTGGTGT
TGATGAACGGTTGAGGGCACCTTCTGTAGAAGATGTTTTTGCACTAGGAG
ATTGCGCAGGTTTTCTTGAACAAACAGGGAAGCCAGTGCTGCCTGCTCTA
GCACAGGTAACAGAAAGGCAGGGGAAATACTTGGCGGAATTGTTTAACAA
AAAGATAGGCGAGCAAGATGGAGGCAAGGCACTAAGCGCAAAAGACATCA
ATCTAGGAGACCCATTTGTG
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