FE659207

Overview
NameFE659207
Unique NameFE659207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5722 contig Csv1_Contig5722:540..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.731e-47
Identity = 81/97 (83.51%), Postives = 92/97 (94.85%), Query Frame = 3
Query:    3 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            VTNIIIHG++IHDCK+GGNAMVR SPRHFGWRT+SDGDGVSIFGG+H+WVDHCS SNC+DGL+DAI GSTA T+SNN MTHHDKVMLLGHSDTY++D
Sbjct:  171 VTNIIIHGIHIHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGHSDTYSRD 267          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.569e-46
Identity = 80/97 (82.47%), Postives = 91/97 (93.81%), Query Frame = 3
Query:    3 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            VTNIIIHGL+IHDCK+GGN  VRDSP H+G+RTVSDGDGVSIFGG+H+WVDHCSLSNC+DGL+DAI GSTA TISNN++THH+KVMLLGHSDTY QD
Sbjct:  193 VTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYEQD 289          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.620e-45
Identity = 78/97 (80.41%), Postives = 90/97 (92.78%), Query Frame = 3
Query:    3 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            VTNIIIHG+NIHDCK+ GNA VRDSP H+GWRT SDGD VSIFGG+H+WVDHCSLSNC DGL+DAIHGSTA TISNN+++HH+KVMLLGHSD+YT+D
Sbjct:  171 VTNIIIHGVNIHDCKRKGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGHSDSYTRD 267          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.413e-43
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 3
Query:    6 TNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            +NIIIHG+NIHDCK+ GN  +RDSP H GW  VSDGDG+SIFGG +IWVDHCSLSNC DGL+DAIHGSTA TISNN+ THHDKVMLLGHSD++TQD
Sbjct:  166 SNIIIHGINIHDCKQSGNGNIRDSPNHSGWWDVSDGDGISIFGGKNIWVDHCSLSNCHDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSFTQD 261          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.763e-43
Identity = 74/96 (77.08%), Postives = 82/96 (85.42%), Query Frame = 3
Query:    6 TNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            TNIIIHG+NIHDCK G   M++D P H GW   SDGD V+IFGG H+W+DHCSLSNCDDGL+DAIHGSTA TISNN MTHHDKVMLLGHSD+YTQD
Sbjct:  173 TNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGDAVAIFGGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQD 268          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.087e-41
Identity = 71/97 (73.20%), Postives = 88/97 (90.72%), Query Frame = 3
Query:    3 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            VTNIIIHG+N+HDC++ GNAMVR SP H+GWRT++DGD +SIFG +HIW+DH SLSNC DGL+DAI GSTA TISNN+MTHH++VML+GHSD+YT+D
Sbjct:  203 VTNIIIHGINVHDCRRTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTRD 299          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.045e-41
Identity = 71/97 (73.20%), Postives = 86/97 (88.66%), Query Frame = 3
Query:    3 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            VTNIIIHG++IHDC+  GNAMVR SP H+GWRT++DGDG+SIFG +HIW+DH SLSNC DGL+DA+  STA TISNN+ THH++VMLLGHSDTYT+D
Sbjct:  180 VTNIIIHGIHIHDCRPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRD 276          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.497e-40
Identity = 71/97 (73.20%), Postives = 85/97 (87.63%), Query Frame = 3
Query:    3 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            +TN+IIHGL+IHDCK  GNAMVR SP HFGWRT++DGD VSIFG +HIW+DH SLS+C DGLVDA+ GSTA T+SNN  THH++VMLLGHSD+YT+D
Sbjct:  233 ITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKD 329          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.964e-40
Identity = 69/97 (71.13%), Postives = 87/97 (89.69%), Query Frame = 3
Query:    3 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            VTNIIIHG+NIHDCK+ GNAMVR S  H+GWRT++DGDG+SIFG +HIW+DH SLS+C DGL+DAI GSTA TISNN++THH++ +LLGH+D+YT+D
Sbjct:  181 VTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRD 277          
BLAST of FE659207 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.790e-40
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 3
Query:    6 TNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTATTISNNFMTHHDKVMLLGHSDTYTQD 293
            +NIIIHG++IHDCK+ GN  +R+SP H GW T SDGDG+SIF    IW+DH SLSNC DGL+DAIHGSTA TISNN+MTHHDKVMLLGHSD+YTQD
Sbjct:  165 SNIIIHGIHIHDCKQAGNGNIRNSPHHSGWWTQSDGDGISIFASKDIWIDHNSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQD 260          
The following BLAST results are available for this feature:
BLAST of FE659207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL18_ARATH1.731e-4783.51Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH5.569e-4682.47Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH1.620e-4580.41Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL18_SOLLC4.413e-4378.13Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL11_ARATH5.763e-4377.08Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH1.087e-4173.20Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL20_ARATH7.045e-4173.20Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL15_ARATH3.497e-4073.20Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH5.964e-4071.13Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL7.790e-4073.96Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description145 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659207 ID=FE659207; Name=FE659207; organism=Citrus sinensis; type=EST; length=295bp
ACGTGACCAACATTATTATCCATGGGTTAAACATACACGACTGTAAAAAG
GGGGGCAACGCTATGGTGAGGGACTCACCGAGACACTTCGGATGGAGGAC
AGTATCCGACGGTGATGGCGTCTCCATATTCGGTGGGACTCACATCTGGG
TTGATCACTGCTCGTTATCGAACTGTGATGATGGACTGGTCGATGCCATT
CATGGGTCCACGGCTACCACTATTTCGAACAATTTCATGACCCACCATGA
TAAGGTGATGTTATTGGGTCACAGCGATACCTACACTCAGGACAA
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