FE659174

Overview
NameFE659174
Unique NameFE659174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length235
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5722 contig Csv1_Contig5722:152..386. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.437e-38
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = -1
Query:    2 HKSINASRRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 235
            HKSINASRRNLGYL CGTGNPIDDCWRCDPNW  NRQRLADCAIGFGKNA+GGR+GRIYVVTDPG+ D VNP PGTLR
Sbjct:   34 HKSINASRRNLGYLSCGTGNPIDDCWRCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDPVNPVPGTLR 111          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.965e-36
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = -1
Query:    2 HKSINASRRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 235
            ++ INASRRNLG L CGTGNPIDDCWRCDP WEKNRQRLADCAIGFGK+A+GGRDG+IYVVTD  D DVVNPKPGTLR
Sbjct:   41 NEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLR 118          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.080e-33
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = -1
Query:    2 HKSINAS---RRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 235
            HKSINAS   RR LGYL C TGNPIDDCWRCDP+WE++RQRLADCAIGFGKNA+GGRDGRIYVVTD G+ + V+PKPGTLR
Sbjct:   38 HKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLR 118          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.842e-33
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = -1
Query:    2 NASRRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 223
            NASRR+L YL C TGNPIDDCWRCDPNWE NRQRLADCAIGFGKNA+GGR GRIYVVTDP + D VNP+PGTLR
Sbjct:   46 NASRRSLAYLSCRTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLR 119          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.660e-32
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = -1
Query:    2 HKSINAS--RRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 235
            H+ IN S  RR LG+  CG+GNPIDDCWRCD +WEKNR+RLADC IGFGKNA+GGRDG IYVVTDPG+ D VNP+PGTLR
Sbjct:   61 HRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLR 140          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.537e-32
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = -1
Query:    2 SRRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 217
            +RR LG+  CGTGNPIDDCWRCD NW KNR+RLADC IGFG+NA+GGRDGR Y+VTDP D DVVNPKPGTLR
Sbjct:  109 ARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLR 180          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.925e-32
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = -1
Query:    2 NASRRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 223
            +  RR LGY  CGTGNPIDDCWRCDPNW KNR+RLADC IGFG+NA+GGRDGR YVVTDP D + VNP+PGTLR
Sbjct:   66 HTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLR 139          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.235e-29
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = -1
Query:    2 NASRRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 223
            +  RR LG+  C TGNPIDDCWRCD NW   R+RLA+CAIGFG+NA+GGRDGR YVVTDP D+D VNP+PGTLR
Sbjct:   77 STERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLR 150          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.752e-29
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = -1
Query:    2 NASRRNLGYLPCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 223
            +  RR LGY  C TGNPIDDCWRCD  W+  R+RLADC+IGFG+NA+GGRDGR YVVTDPGD D VNP PGTLR
Sbjct:   53 STERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPGTLR 126          
BLAST of FE659174 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.191e-28
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = -1
Query:    2 RRNLGYLP-CGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLR 214
            RR LG+   C TGNPIDDCWRCD  W + R+RLADCAIGFG+NAVGGRDGR Y+VTDP D+D V PKPGTLR
Sbjct:   57 RRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPGTLR 128          
The following BLAST results are available for this feature:
BLAST of FE659174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL_ZINEL9.437e-3888.46Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL5_ARATH3.965e-3684.62Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL18_ARATH1.080e-3380.25Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL11_ARATH1.842e-3383.78Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH2.660e-3275.00Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL15_ARATH4.537e-3279.17Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL1_ARATH5.925e-3277.03Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH1.235e-2971.62Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH2.752e-2972.97Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL14_ARATH5.191e-2873.61Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank description44 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659174 ID=FE659174; Name=FE659174; organism=Citrus sinensis; type=EST; length=235bp
ACCTTAGAGTTCCGGGTTTAGGGTTTACGACGTCATAGTCACCGGGGTCA
GTGACCACATAAATTCTACCATCACGCCCACCAACCGCATTCTTGCCGAA
CCCAATCGCACAATCCGCCAACCTTTGCCTGTTCTTCTCCCAGTTGGGGT
CGCACCGCCAGCAATCGTCAATCGGATTGCCGGTTCCGCAAGGCAAGTAA
CCCAGGTTCCTCCTAGACGCATTGATGCTCTTGTG
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