FE659163

Overview
NameFE659163
Unique NameFE659163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9687 contig Csv1_Contig9687:919..1335. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FE659163 vs. ExPASy Swiss-Prot
Match: RPB3A_ARATH (DNA-directed RNA polymerase II subunit RPB3-A OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 2 
Query:    2 LNAIEVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 112
            LNAI++LKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct:  283 LNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319
[Close]
BLAST of FE659163 vs. ExPASy Swiss-Prot
Match: RPB3B_ARATH (DNA-directed RNA polymerase II subunit RPB3-B OS=Arabidopsis thaliana GN=RPB36B PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.567e-11
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:    2 LNAIEVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 112
            LNAI++LKQKLDA+RLS++TVEADDQFGELGAHMR G
Sbjct:  283 LNAIDILKQKLDAIRLSDNTVEADDQFGELGAHMREG 319
The following BLAST results are available for this feature:
BLAST of FE659163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RPB3A_ARATH1.042e-1291.89DNA-directed RNA polymerase II subunit RPB3-A OS=A... [more]
RPB3B_ARATH2.567e-1183.78DNA-directed RNA polymerase II subunit RPB3-B OS=A... [more]
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Properties
Property NameValue
Genbank description12 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659163 ID=FE659163; Name=FE659163; organism=Citrus sinensis; type=EST; length=417bp
ACTGAATGCCATAGAAGTCCTGAAGCAAAAGCTGGATGCAGTTCGCCTCT
CTGAGGACACAGTAGAAGCTGATGATCAGTTTGGTGAACTTGGAGCACAT
ATGCGAGGAGGATGATTCGTCAGTAACAGGACTGATTCGTCAGTTTGGTG
AACTTGTGTGTTGAAGGATCTAGTAAATTAAATGAATCCATAACTAACCA
AATGTTTTAACTATCATAATGGATGAATCTGTTTTCTGCAATCGTTCTTA
GACATTTAGAAGACAGTTAACATTATTATCTTGTTTGGACTTCACGTCAA
AGGTTACCAACTTCCCTACCGAGCATGTAAGCAGTGTATTAGATTATGCC
AATAGATGGCGATTAATTTGGAACTATTATATAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGCTTG
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