FE659129

Overview
NameFE659129
Unique NameFE659129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length235
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FE659129 vs. ExPASy Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.611e-13
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  130 LTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIA 234
            LTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIA
Sbjct:   82 LTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIA 116
[Close]
BLAST of FE659129 vs. ExPASy Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.611e-13
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  130 LTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIA 234
            LTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIA
Sbjct:   82 LTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIA 116
[Close]
BLAST of FE659129 vs. ExPASy Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.765e-11
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = -2 
Query:  133 LTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNI 234
            LTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I
Sbjct:   84 LTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRI 117
The following BLAST results are available for this feature:
BLAST of FE659129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL223_ARATH3.611e-1394.2960S ribosomal protein L22-3 OS=Arabidopsis thalian... [more]
RL222_ARATH3.611e-1394.2960S ribosomal protein L22-2 OS=Arabidopsis thalian... [more]
RL221_ARATH5.765e-1185.29Putative 60S ribosomal protein L22-1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC68 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659129 ID=FE659129; Name=FE659129; organism=Citrus sinensis; type=EST; length=235bp
ACAAAAAAGGGAGAACCTAATAAAAATAAAGATGATGAAAATCCCACCAC
ATGGTTTCTATTATAACAAATGAGACAAAAACAAGTGCTCAAAATCCAAG
TTCTAATCTTCCTCCTCACCCTCATTCTCGGCAATATTGAAGTATCTCAA
TTCATAAACATTCCGGTCCTTGTTAGATGCAATCACACGAAGCCAATCAC
GCACATTGTGCTTCTTCAAATACTTCTTTGTCAAG
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