EY720562

Overview
NameEY720562
Unique NameEY720562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11204 contig Csv1_Contig11204:1..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720562 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 75/291 (25.77%), Postives = 111/291 (38.14%), Query Frame = 2
Query:   23 DDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKXXXXXXXXXXXXXXXALVKGNKEQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQN--------------TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFFXXXXXXXXXXXXXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEMDKSXNETNDHRNLYPGKEGFILEGTPAAEGVSDDDMSKRQMLHEKKMTNLHPR-ISMFQGREL*YTINQVHDRKRMEKLCIGA 850
            D + E   DD +  ++ED      FD+E +    + +K               A  K +   + D  + ES  + D               Q +   ++ N              T+FI NL FD + EE+ +    FGE+     VLH  T+  KG  F +F                    G+ L GRQL V            +  K    T   RNLY  +EG I  GT AAEGVS  DM+KR+     K   L  + I + + R   + + +  D K++ KL + A
Sbjct:  227 DMEEEENDDDDDDDDEED----GVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEESDSIDD--GEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGT-RNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSA 510          
BLAST of EY720562 vs. ExPASy Swiss-Prot
Match: RBM28_MOUSE (RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.833e-13
Identity = 64/195 (32.82%), Postives = 87/195 (44.62%), Query Frame = 2
Query:  299 TEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFFXXXXXXXXXXXXXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEMDKSXNETNDHRNLYPGKEGFILEGTPAAEGVSDDDMSKR---QMLHEKKMTNLHPRISMFQGREL*YTINQVHDRKRMEKLCIGAVVSRPRGE 874
            TEG+     T+FI NL FD + E + +    FG++     VLH  T+  KG  F +F                  G G+ L GRQL V            +  K    T   RNLY  +EG I  GT AAEGVS  DM+KR   ++L  +K+ N    I + Q R   +   +  D K++ KL + A     RGE
Sbjct:  322 TEGK-----TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKN--QNIFVSQTRLCLHNFPKAVDDKQLRKLLLEAT----RGE 504          
The following BLAST results are available for this feature:
BLAST of EY720562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM28_HUMAN1.175e-1325.77RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
RBM28_MOUSE5.833e-1332.82RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-B07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720562 ID=EY720562; Name=EY720562; organism=Citrus sinensis; type=EST; length=874bp
CCACGCGTCCGATGATTTGGGCGATGATGATGCAGAGACTGCTTCAGATG
ACTCAAATTCATCAGAGAAAGAAGACTTGCCTTCTAATGCTGACTTTGAT
GAGGAAGTAGACATTGCAAGGAAAGTTCTAAATAAGCTCACTTCTACGAC
AGGCTCTCTTCCTTCTCTCAGTGATGATTCTGCACTGGTCAAGGGAAACA
AGGAGCAGGATTCTGATAAAACAGTTAATGAATCTGCAAAGGTATCAGAT
GTTTCTAAACTAAACTCCAGCAAAAGCAAACCAAAAAGTCTTAAACAAAC
AGAGGGAGAAGATGAATTGCAGAATACAATTTTCATATGCAACCTTCCTT
TTGATCTTGACAACGAAGAAGTGAAGCAGAGATTTTCTGCATTTGGGGAA
GTGGTATCCTTTGTCCCAGTTCTTCATCAAGTCACCAAGCGACCAAAAGG
GACTGGTTTCCTCAAGTTCTTCAAAACAGTAGAGGCAGCTACTGCTGCAG
TTTCAGCGTCAAAAACTACTTCAGGTCTGGGAATTTTTCTGAAAGGAAGA
CAACTGACTGTNTTGAAGGCTTTGGATAAAAAATTGGCTCATGATAAGGA
AATGGACAAGTCCANAAATGAGACTAATGACCACCGAAATCTTTACCCTG
GCAAGGAAGGCTTTATCCTTGAAGGGACTCCAGCTGCTGAAGGTGTTTCA
GATGATGATATGTCAAAACGCCAAATGTTGCATGAAAAAAAGATGACGAA
CCTTCATCCCCGAATTTCCATGTTTCAAGGACGAGAGTTGTGATATACAA
TTAACCAAGTGCATGACCGAAAAAGGATGGAGAAGCTCTGTATTGGAGCT
GTTGTCTCCCGACCCCGAGGCGAA
back to top