EY720461

Overview
NameEY720461
Unique NameEY720461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_POPJC (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii GN=ndhM PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.800e-71
Identity = 138/201 (68.66%), Postives = 151/201 (75.12%), Query Frame = 1
Query:  142 MATTSINMASAKFSMLGWIGGKRELKKKRVISISXXXXXXXXXXXXXXXXXXXXXAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRIMFNNN 744
            MA +S  MA AKFSMLGW+GG+RELK +RVIS+S                      +VKQ   P RPVEPQ NV+SKNM REYGGQWLS  TRHVRIYAAYIDPET EFDQTQ DKLTLILDPT EFVWTDE+C KV++YFQELVDHYEGA LTEYTLRLIGSD+EHY       GEI YNM  RVLNFSMGKPRI+FNN+
Sbjct:    1 MAASSSYMACAKFSMLGWLGGRRELKMRRVISVSPQEQAEVQESQEVNAQEEE---KVKQPVQP-RPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLILDPTDEFVWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNMNARVLNFSMGKPRILFNND 197          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_VITVI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera GN=ndhM PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.043e-70
Identity = 136/201 (67.66%), Postives = 146/201 (72.64%), Query Frame = 1
Query:  142 MATTSINMASAKFSMLGWIGGKRELKKKRVISISXXXXXXXXXXXXXXXXXXXXXAQVKQQQTPL-RPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRIMFNN 741
            MA TS   A  KFSMLGWIGGKREL+K+R   IS                        +Q +  L RPVEPQ NV+SKNMSREYGGQWLS  TRHVRIYAAYIDP T EFDQTQMDKLTLILDPT EFVWT E+CNKV+AYFQELVDHYEGA LTEYTLRLIGSD+EHY       GEI YNM  RVLNFSMGKPRI+FN+
Sbjct:    1 MAATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQQQAEVEESQQVNAQEEEQEKMKQQGKQKLPRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPTNEFVWTSETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNMNARVLNFSMGKPRILFND 201          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_ARATH (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana GN=ndhM PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.477e-59
Identity = 109/147 (74.15%), Postives = 123/147 (83.67%), Query Frame = 1
Query:  310 QVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRIMFNNNEL 750
            ++K+Q TPLRPVE Q NV+SK M  ++GGQWLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVDHYEGA LTEYTLRLIGSD+EHY       GEI YNM  RVLNFSMGKPR+ FN + +
Sbjct:   60 KMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSJ (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhM PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.673e-55
Identity = 102/145 (70.34%), Postives = 118/145 (81.38%), Query Frame = 1
Query:  319 QQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRIMFNNNELP 753
            ++Q P +P+  Q    SKNMSREYGGQWLSC TRH+RIYAAYI+PET  FDQTQMDKLTL+LDPT EFVWTDE+C KV+  FQ+LVDHYEGA L+EYTLRLIGSDLEH+       GEI YNM  RVLNFSMGKPRI FN++++P
Sbjct:   73 RRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica GN=ndhM PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.673e-55
Identity = 102/145 (70.34%), Postives = 118/145 (81.38%), Query Frame = 1
Query:  319 QQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRIMFNNNELP 753
            ++Q P +P+  Q    SKNMSREYGGQWLSC TRH+RIYAAYI+PET  FDQTQMDKLTL+LDPT EFVWTDE+C KV+  FQ+LVDHYEGA L+EYTLRLIGSDLEH+       GEI YNM  RVLNFSMGKPRI FN++++P
Sbjct:   73 RRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PHYPA (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Physcomitrella patens GN=ndhM PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.091e-42
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 1
Query:  334 LRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRI 729
            +R  E +   ++K +SRE GGQWLSC TRHVRIYA Y+DPET   DQ+Q+DKLTL+LDP  EF W +E   KV+  ++ELV+ Y GA LTEYTLRLIGSDLEHY     + GE+ YN+ CRVLNFSMGKPRI
Sbjct:   61 VRAEEVKEVTQAKGLSRESGGQWLSCTTRHVRIYAGYVDPETQVMDQSQLDKLTLMLDPDNEFEWPEEMVEKVYDKYRELVETYAGADLTEYTLRLIGSDLEHYIRKLLLAGELKYNLDCRVLNFSMGKPRI 192          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_GLOVI (NAD(P)H-quinone oxidoreductase subunit M OS=Gloeobacter violaceus GN=ndhM PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRI 729
            L   TRHV I+AA I  + +    T   KLTL +DP  EF+W D +  KV++ F  LV  Y G  LTEY LR IGSDLE++       GEI YN+  RVLNFSMG+P++
Sbjct:    2 LKSTTRHVHIFAADIRNDNFIASDT---KLTLDVDPDNEFIWNDPALQKVYSEFDRLVAAYTGLALTEYNLRRIGSDLENFIRGLLQQGEIAYNLDSRVLNFSMGRPQV 107          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_NOSP7 (NAD(P)H-quinone oxidoreductase subunit M OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhM PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRIMFNNNEL 750
            L   TRHVRI+A  ID +       Q+  LTL +DP  EF W +++  KV+  F ELV+   GA LT+Y LR +GSDLEHY  S    GEI YN+  RV N+SMG P++  ++ ++
Sbjct:    7 LKSTTRHVRIFAGEIDRDGDLVPSQQV--LTLDIDPDNEFNWNEDALQKVYRKFDELVEASSGADLTDYNLRRVGSDLEHYLRSLLQLGEISYNLSARVTNYSMGVPQVAIDDKQV 120          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_SYNJB (NAD(P)H-quinone oxidoreductase subunit M OS=Synechococcus sp. GN=ndhM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRI 729
            L C TRHV I+A  +  +     +   D  TL +DP  E VWTD +  KV+A F+ELV+ Y G  LTEY +R IGSDLEH+  S    GEI YN+  R  NFSMG P+I
Sbjct:    2 LKCTTRHVHIFAGEVTADNNFVPRD--DLFTLDVDPDNELVWTDAALQKVYARFEELVEEYRGRDLTEYNIRRIGSDLEHFIRSLLKQGEIAYNLQGRAPNFSMGFPQI 108          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_SYNJA (NAD(P)H-quinone oxidoreductase subunit M OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPRI 729
            L C TRHV I+A  +  +     +   D LTL +DP  E VW D +  KV+A F+ELV+ Y G  LTEY LR IGSDLEH+  S    GEI YN+  R  N+SMG P+I
Sbjct:    2 LKCTTRHVHIFAGEVTADNHFVPRD--DLLTLDVDPDNELVWNDAALQKVYARFEELVEEYRGRDLTEYNLRRIGSDLEHFIRSLLKQGEIAYNLQGRTPNYSMGFPQI 108          
The following BLAST results are available for this feature:
BLAST of EY720461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NDHM_POPJC2.800e-7168.66NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_VITVI4.043e-7067.66NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ARATH5.477e-5974.15NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ORYSJ3.673e-5570.34NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ORYSI3.673e-5570.34NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_PHYPA2.091e-4262.12NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_GLOVI1.010e-2048.62NAD(P)H-quinone oxidoreductase subunit M OS=Gloeob... [more]
NDHM_NOSP71.319e-2044.83NAD(P)H-quinone oxidoreductase subunit M OS=Nostoc... [more]
NDHM_SYNJB1.722e-2048.62NAD(P)H-quinone oxidoreductase subunit M OS=Synech... [more]
NDHM_SYNJA1.722e-2048.62NAD(P)H-quinone oxidoreductase subunit M OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-G07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720461 ID=EY720461; Name=EY720461; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGCAGGCATCTTATCCTCCCCCCCTCCCAAATAAAAAGGAT
CCCAATTCCGTTAGTCTTTTGCCAAAAACTCCTAAGACTCGGGTGCTGAA
AAAGAGCTGTCCCAAGCTAAGCTACAAACACAAGTTATAAAATGGCCACA
ACTTCCATTAACATGGCTTCTGCAAAATTCTCAATGTTGGGATGGATTGG
AGGGAAAAGAGAGCTGAAAAAGAAAAGGGTAATATCGATTTCAGCTCAGC
AACAAGCTGAAGTTGAAGAGTCACAATCACAGCAAGTGAAGGAGAATGAA
AACCAAGCTCAGGTGAAGCAGCAGCAGACACCGTTGAGGCCAGTGGAGCC
GCAGACAAATGTAAGGAGCAAAAATATGAGCAGAGAATATGGAGGGCAGT
GGCTGAGCTGTGCCACGAGACATGTGAGGATTTACGCCGCATATATTGAT
CCTGAAACCTGGGAATTTGATCAAACACAGATGGATAAGCTCACTCTTAT
TTTGGATCCTACTAAAGAATTTGTGTGGACTGATGAGAGTTGCAATAAGG
TTTTTGCTTATTTCCAGGAGCTTGTTGATCACTATGAGGGCGCCCTGTTG
ACAGAATACACACTCCGGCTGATTGGTTCTGACTTAGAGCATTACTACGG
AAGCTGCTATATGACGGGGGAGATTNAATACAACATGGGATGCAGGGTAC
TAAACTTCAGCATGGGGAAGCCCCGTATCATGTTCAATAACAACGAACTC
CCAACTCAAGATGTTGCACAGTGATAGATTAGGGATCTTACAGAAATGGG
TAGTGAAATGAAAGCCAATATATCCAGATGTACCATGATGTTCCCAAACA
TTCAAAGATTTCTCCAAGTTGGCTGTGTCCTT
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