EY720447

Overview
NameEY720447
Unique NameEY720447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7308 contig Csv1_Contig7308:87..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720447 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.135e-24
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 3
Query:  120 LDPKTNVDSKDVVYSPEHNLS----ARLYLPKNTNQNQKLPLLVYFHGGGFFIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFQ-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWG 605
            +D  TN+ ++  +Y P   L       L L K  +  + +P+L++FHGG F   +A S  Y  +   LV+   ++ VSVDYRR+PEH  P AY+D W+A+ WV S V       WL    D    V+ +GDS+G NIAH++A+R   E   G  V+G +L+HP F G
Sbjct:   69 VDSTTNLLTR--IYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE---GVKVLGNILLHPMFGG 223          
BLAST of EY720447 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.625e-23
Identity = 65/179 (36.31%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  108 VPPSLDPKTNVDSKDVVYSPEHNLSARLYLP------------KNTNQNQKLPLLVYFHGGGFFIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFQ-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWG 605
            VP + +P   V S DV+   + NL +R+Y P            +N    + +P++V+FHGG F   +A S  Y      LV     + VSV+YRRAPE+  P AY+D W  +KWV S         WL    D + R+F +GDS+G NI H++A+R     ID   V+G +L++P F G
Sbjct:   53 VPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGG 221          
BLAST of EY720447 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.625e-23
Identity = 65/181 (35.91%), Postives = 94/181 (51.93%), Query Frame = 3
Query:  108 VPPSLDPKTNVDSKDVVYSPEHNLSARLYLPKNTNQNQK--------------LPLLVYFHGGGFFIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFQ-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWG 605
            V  + +P   V S DV+     NL +R+Y P   +Q Q               +P++++FHGG F   +A S  Y      LV     + VSV+YRRAPE+P P AY+D W A+ WV S         WL    D +  +F +GDS+G NIAH++A+R G     G +V+G +L++P F G
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGG 223          
BLAST of EY720447 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.943e-21
Identity = 68/203 (33.50%), Postives = 95/203 (46.80%), Query Frame = 3
Query:   72 DGKVERLMGTDI---VPPSLDPKTNVDSKDVVYSPEHNLSARLYLPKNTNQNQK---------------------LPLLVYFHGGGFFIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFQ-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWG 605
            DG  ER +G  +   VP +  P   V S D +      L  R+Y        ++                      P++++FHGG F   +A S  Y +     V  +  + VSV+YRRAPEH  P AY+D W A+KWV S       + ++    D Q RVF SGDS+G NIAHH+A+R   E   G  V G +L++  F G
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGG 230          
BLAST of EY720447 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 45/136 (33.09%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  126 PKTNVDSKDVVYSPEHNLSARLYLPKNTNQNQKLPLLVYFHGGGFFIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNR-NADFQRVFYSGDSAGANIAHHMA 530
            P T+ ++  V  +  +N+  R+Y+PK  ++  +  L  Y HGGG+ + +A    Y           +++ VS +YR APE+  PI +ED +DA+KW          +D L +   D +RV  SGDSAG N+A  +A
Sbjct:   71 PPTSDENVTVTETTFNNVPVRVYVPKRKSKTLRRGLF-YIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLR-------QDVLEKYGVDPERVGVSGDSAGGNLAAAVA 198          
The following BLAST results are available for this feature:
BLAST of EY720447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L2_ARATH7.135e-2438.32Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH4.625e-2336.31Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH4.625e-2335.91Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ1.943e-2133.50Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT1.262e-1233.09Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-F03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720447 ID=EY720447; Name=EY720447; organism=Citrus sinensis; type=EST; length=862bp
CACGCGTCCGTTCCACCAACCCATCATCAGAAGTCGCCCATGACTTCTCA
CCTTTGCTAAAAGTACACAAAGACGGCAAAGTAGAAAGGCTTATGGGCAC
CGATATCGTTCCCCCATCACTTGATCCCAAAACAAACGTTGATTCCAAAG
ACGTTGTGTATTCTCCTGAACATAATTTATCTGCTCGGCTTTACCTCCCG
AAAAACACAAATCAAAACCAAAAACTTCCCCTTCTTGTTTATTTTCACGG
AGGAGGTTTTTTCATCGAGACTGCTTTTTCACCAACTTACCATAATTACC
TCAACGACTTGGTCTCTGAAGCTAACATCATCGCAGTATCGGTCGACTAC
CGAAGAGCCCCAGAGCATCCTCTTCCTATCGCTTATGAAGATTCATGGGA
CGCAGTCAAATGGGTTGCTTCCCATGTTGACGGAAATGGCCCCGAAGATT
GGCTCAACCGTAATGCTGATTTTCAGCGAGTGTTTTACTCTGGGGACAGC
GCTGGTGCTAATATTGCTCATCACATGGCGATAAGAAACGGTGGAGAAAT
TATCGACGGCTTTAATGTTGTTGGTATTGTCTTGATTCATCCATACTTTT
GGGGGTGTTGAAACCTGTTGGTTCCGAGCCTACTGATGTTAAAATAAGAG
CTGGAACGGAGAGAATTTGGCTATTTGCTTGTCCAAGCACAAGCGGGCTC
GATGATCCGTGGGTTNATCCGTGTGCCGACGGTTCGAGCCTCGCAAGCCT
GGGGTGCGCCANNGTGCTGGTGTTTGCTGCGGAAAAGGATTTCTGTGCCC
TAAANGATGGTTTACTATGAAAATTGAANGGAAATGGGTGGGGAGGCCAT
GTGAAATAGTTG
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