EY720412
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2) HSP 1 Score: 315.464 bits (807), Expect = 6.596e-86 Identity = 161/197 (81.73%), Postives = 181/197 (91.88%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705 AA+IV KSGK++VSR +VDMSRIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQPIEAL+LLLVT KQSNILEDL TL LLSKLVPEYS SLDE+GI + +FEL+FAFDEVISLGHKE+VTVAQVKQYCEMESHEEKLHKLV+QSKIN+TKDVMKRKA+EIDKSKIEKN+ G F S+ SMGSGR+ES F+++SI Sbjct: 5 AAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNK--PGGFSSMGSMGSGRLESGFNELSI 199 HSP 2 Score: 24.2534 bits (51), Expect = 6.596e-86 Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3 Query: 801 SSANAPPKGLGMQLG 845 SS APPK GM+LG Sbjct: 232 SSVTAPPKSSGMKLG 246
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 1.464e-85 Identity = 159/197 (80.71%), Postives = 179/197 (90.86%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705 AASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDE+G+CKTAFEL+FAFDE ISLG+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK ++E+ + DKG + S+ G IE +F+DMSI Sbjct: 5 AASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDKGGYSSIS--GPRVIEKTFNDMSI 199 HSP 2 Score: 25.0238 bits (53), Expect = 1.464e-85 Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 798 TSSANAPPKGLGMQLG 845 +++A AP KGLGM+LG Sbjct: 230 SAAATAPGKGLGMKLG 245
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 9.408e-85 Identity = 157/197 (79.70%), Postives = 177/197 (89.85%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705 AASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDE+G+CKTAFEL+FAFDE I LG+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK K+E+ + DKG + ++ G +E +F DMSI Sbjct: 5 AASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDKGGYSAIS--GPRVVEKAFGDMSI 199 HSP 2 Score: 25.0238 bits (53), Expect = 9.408e-85 Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 798 TSSANAPPKGLGMQLG 845 +++A AP KGLGM+LG Sbjct: 229 SAAATAPGKGLGMKLG 244
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2) HSP 1 Score: 309.686 bits (792), Expect = 1.327e-83 Identity = 159/197 (80.71%), Postives = 177/197 (89.85%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705 AASI+SKSGK LVSRQFVDMSRIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQPIEALYLLL+TNKQSNILEDL+TLRLLSKL+PEY+ SLDE+G+CK AFELLFAF E ISLG+KENVTVAQVKQYCEMESHEEKLHKLV+QSKINETKDVM+RK +EI+KSK ++ + DKG F GS R +SFSDM I Sbjct: 5 AASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGGF------GSLRTPNSFSDMGI 195
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53 Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636 AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY +L+E+ I + F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K Sbjct: 5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53 Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636 AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY +L+E+ I + F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K Sbjct: 5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53 Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636 AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY +L+E+ I + F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K Sbjct: 5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53 Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636 AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY +L+E+ I + F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K Sbjct: 5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_BOVIN (Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53 Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636 AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY +L+E+ I + F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K Sbjct: 5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.868e-53 Identity = 97/171 (56.73%), Postives = 141/171 (82.46%), Query Frame = 1 Query: 115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNR 627 AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY +L+E+ I + F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R Sbjct: 5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAER 175 The following BLAST results are available for this feature:
BLAST of EY720412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY720412 ID=EY720412; Name=EY720412; organism=Citrus sinensis; type=EST; length=845bpback to top |