EY720412

Overview
NameEY720412
Unique NameEY720412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12688 contig Csv1_Contig12688:35..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_ARATH (Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 6.596e-86
Identity = 161/197 (81.73%), Postives = 181/197 (91.88%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705
            AA+IV KSGK++VSR +VDMSRIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQPIEAL+LLLVT KQSNILEDL TL LLSKLVPEYS SLDE+GI + +FEL+FAFDEVISLGHKE+VTVAQVKQYCEMESHEEKLHKLV+QSKIN+TKDVMKRKA+EIDKSKIEKN+   G F S+ SMGSGR+ES F+++SI
Sbjct:    5 AAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNK--PGGFSSMGSMGSGRLESGFNELSI 199          

HSP 2 Score: 24.2534 bits (51), Expect = 6.596e-86
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  801 SSANAPPKGLGMQLG 845
            SS  APPK  GM+LG
Sbjct:  232 SSVTAPPKSSGMKLG 246          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.464e-85
Identity = 159/197 (80.71%), Postives = 179/197 (90.86%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705
            AASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDE+G+CKTAFEL+FAFDE ISLG+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK ++E+ + DKG + S+   G   IE +F+DMSI
Sbjct:    5 AASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDKGGYSSIS--GPRVIEKTFNDMSI 199          

HSP 2 Score: 25.0238 bits (53), Expect = 1.464e-85
Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  798 TSSANAPPKGLGMQLG 845
            +++A AP KGLGM+LG
Sbjct:  230 SAAATAPGKGLGMKLG 245          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD2_ORYSJ (Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 9.408e-85
Identity = 157/197 (79.70%), Postives = 177/197 (89.85%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705
            AASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDE+G+CKTAFEL+FAFDE I LG+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK K+E+ + DKG + ++   G   +E +F DMSI
Sbjct:    5 AASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDKGGYSAIS--GPRVVEKAFGDMSI 199          

HSP 2 Score: 25.0238 bits (53), Expect = 9.408e-85
Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  798 TSSANAPPKGLGMQLG 845
            +++A AP KGLGM+LG
Sbjct:  229 SAAATAPGKGLGMKLG 244          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD3_ORYSJ (Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 1.327e-83
Identity = 159/197 (80.71%), Postives = 177/197 (89.85%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGRFMSLQSMGSGRIESSFSDMSI 705
            AASI+SKSGK LVSRQFVDMSRIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQPIEALYLLL+TNKQSNILEDL+TLRLLSKL+PEY+ SLDE+G+CK AFELLFAF E ISLG+KENVTVAQVKQYCEMESHEEKLHKLV+QSKINETKDVM+RK +EI+KSK ++ + DKG F      GS R  +SFSDM I
Sbjct:    5 AASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGGF------GSLRTPNSFSDMGI 195          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_BOVIN (Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 98/174 (56.32%), Postives = 142/174 (81.61%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 636
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R  K
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGK 178          
BLAST of EY720412 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.868e-53
Identity = 97/171 (56.73%), Postives = 141/171 (82.46%), Query Frame = 1
Query:  115 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEDGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNR 627
            AA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP+E LY++L+T K SNILEDLETLRL S+++PEY  +L+E+ I +  F+L+FAFDE+++LG++ENV +AQ++ + EM+SHEEK+ + V +++  E K  M+RKA E+ +++ +  R
Sbjct:    5 AAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAER 175          
The following BLAST results are available for this feature:
BLAST of EY720412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPD_ARATH6.596e-8681.73Coatomer subunit delta OS=Arabidopsis thaliana GN=... [more]
COPD1_ORYSJ1.464e-8580.71Coatomer subunit delta-1 OS=Oryza sativa subsp. ja... [more]
COPD2_ORYSJ9.408e-8579.70Coatomer subunit delta-2 OS=Oryza sativa subsp. ja... [more]
COPD3_ORYSJ1.327e-8380.71Coatomer subunit delta-3 OS=Oryza sativa subsp. ja... [more]
COPD_RAT1.095e-5356.32Coatomer subunit delta OS=Rattus norvegicus GN=Arc... [more]
COPD_PONAB1.095e-5356.32Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE... [more]
COPD_MOUSE1.095e-5356.32Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE... [more]
COPD_HUMAN1.095e-5356.32Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE... [more]
COPD_BOVIN1.095e-5356.32Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1... [more]
COPD_CHICK1.868e-5356.73Coatomer subunit delta OS=Gallus gallus GN=ARCN1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-B03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720412 ID=EY720412; Name=EY720412; organism=Citrus sinensis; type=EST; length=845bp
CACGCGTCCGAATTCTGTTGCTTCTGAAGAAGACTAAGACGCACGCAGAG
AAGGACACCGATCCAGGTTCTGTTGGTGGTAGTTTCTTCTTCTTAATTCA
AGATGGTTGTTCTTGCTGCTTCTATCGTGTCCAAATCTGGCAAAATTCTT
GTCTCTAGGCAGTTTGTGGATATGTCTCGAATCAGGATTGAAGGTCTTCT
TGCTGCTTTTCCTAAGTTGGTTGGCACTGGAAAACAGCATACATATGTTG
AGACTGAAAATGTGCGCTATGTTTACCAGCCAATAGAAGCTTTGTATCTG
CTGCTTGTGACAAACAAACAGAGCAACATCCTTGAAGATTTGGAAACTCT
GAGGCTTCTCTCCAAGCTTGTACCTGAATATTCATACTCTCTAGATGAGG
ATGGTATCTGCAAGACAGCTTTTGAGCTGCTTTTTGCATTCGACGAAGTA
ATATCCCTTGGGCACAAGGAAAATGTGACTGTTGCACAGGTTAAGCAATA
CTGTGAGATGGAGAGTCATGAAGAGAAGTTGCACAAGCTTGTGGTGCAGA
GCAAGATCAATGAAACCAAGGATGTCATGAAGCGCAAAGCTAGTGAAATT
GACAAAAGCAAGATTGAGAAGAATAGAGGCGACAAAGGAAGGTTTATGTC
CTTACAGTCAATGGGATCGGGAAGAATTGAAAGTAGCTTTAGCGATATGA
GCATTCTAGTGGTGGAGGTGGTTTTGGCAGTGGTTCTGGGTTTGGTTTGC
GACTACTGATGTTGAGACCTTTCTANCANGTCTAAAGCAGGCCGAACACT
TCATCTGCCAATGCTCCTCCTAAAGGTCTTGGTATGCAACTTGGT
back to top