EY719733

Overview
NameEY719733
Unique NameEY719733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.577e-59
Identity = 115/125 (92.00%), Postives = 118/125 (94.40%), Query Frame = 2
Query:    5 ENKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 379
            +NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E QGTKLKDFVA  QS+ FQSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  393 KNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.083e-57
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 2
Query:    5 ENKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 379
            +NKGIDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E +GTKLKDFV   +S+  QSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  393 KNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.412e-57
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 2
Query:    5 ENKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQ-SANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 379
            +NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+ETQGTKLKDFVAT + SA  +SEIAKLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  393 KNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.618e-53
Identity = 105/124 (84.68%), Postives = 116/124 (93.55%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSAN-FQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 379
            KGIDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE QGTKLKDFV+  +S++  QSEIAKLRH+VEE+AKQFPTIGFEKETMKYKN
Sbjct:  394 KGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.876e-52
Identity = 101/124 (81.45%), Postives = 115/124 (92.74%), Query Frame = 2
Query:    5 ENKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANF-QSEIAKLRHDVEEYAKQFPTIGFEKETMKY 373
            +NKGIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E++GTKLKDFV   Q++++ QSEI+KL+HDVEE+AKQFPTIGFEK TMKY
Sbjct:  393 KNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGFE 355
            KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+T  TKL+DF +   +      ++A LR  VE++A+ FP  GF+
Sbjct:  389 KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.578e-24
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIK-----------SETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 340
            +GIDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+GTPA+T+RGF EEDFA+VA   D AV +AV+I            +E    ++K F+    +     EI +LR +VE +   +P
Sbjct:  400 QGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYP 520          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = 2
Query:   14 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIG 349
            G++G+R E +L+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV  F    V++A K  +E  G  LKDF A T  +  F+ E+A+L   VEE++ +F   G
Sbjct:  396 GVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGFEK 358
            KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++KS+T   KL+DF +   + +     +A LR  VE++A+ FP  GF++
Sbjct:  389 KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 349
            +KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q+ +  LR +VE +A  FP  G
Sbjct:  365 SKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
The following BLAST results are available for this feature:
BLAST of EY719733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GLYN_FLAPR2.577e-5992.00Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR1.083e-5788.80Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU2.412e-5789.68Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH1.618e-5384.68Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA8.876e-5281.45Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN2.875e-2651.72Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_NEUCR1.578e-2448.76Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_CAEBR2.061e-2452.21Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_HUMAN2.691e-2448.72Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN4.590e-2449.57Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-106-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719733 ID=EY719733; Name=EY719733; organism=Citrus sinensis; type=EST; length=664bp
ATTTGAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAG
CTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATGTGTCGGCC
ATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACTTCTAGGGG
ATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGATGCTGCTG
TGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAGGAACAAAGTTGAAA
GATTTCGTGGCCACAACACAGTCCGCTAACTTCCAATCCGAGATTGCGAA
ACTTCGCCATGATGTTGAGGAGTATGCAAAGCAATTCCCCACAATTGGGT
TTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGAAAAACGCCACTGTA
CTAGAGTAGCGGAAGCCAGCCTGTATGAGCTTTTATTACACAGAGGCGAC
GAGGGATGAAATGTAACTTACGATGATGAGCCATGTATCAACTATCGACC
CTGTGATTTGGCGCTTTTATGAATACAATATACAGCAAACCTTGATTTAA
ATCACCATTAATGTATATAAAGTACTCTGTATTTACTGAGGCTTTTAAGA
AGCAAATAAACCTGCAATAAAACTAGAAGCGATATCTTTTTTCAAAAAAA
AAAAAAAAAAAAAA
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