EY719586

Overview
NameEY719586
Unique NameEY719586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1018
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.319e-52
Identity = 98/159 (61.64%), Postives = 120/159 (75.47%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVY--DFEDKINFAVFPSPSGG 472
            HLTHGY T   KKISATSI+FES+PY+VN  TGY+DY+K+E  A  FRPKL+I G SAYPR+WDY R R +ADK GA LLCDMAHISG+VA ++A +PF +C +VTTTTHK+LRGPRAG+IF+R           +G +   D E++INFAVFPS  GG
Sbjct:  156 HLTHGYQTDK-KKISATSIFFESMPYQVNE-TGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFR----KTKRRDAKGNIIDDDLENRINFAVFPSCQGG 308          

HSP 2 Score: 33.4982 bits (75), Expect = 4.319e-52
Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  490 IGALAVALKQASTPAFKAYAKQVR 561
            I  +AVALK+AS+P F+ Y KQVR
Sbjct:  314 IAGIAVALKEASSPDFQEYTKQVR 337          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.644e-50
Identity = 97/157 (61.78%), Postives = 113/157 (71.97%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHG+ T G KKISATSI+FES+PYKVN  TGYI+YD+LEE A  F PKLII G S Y R+ DYAR R +AD+ GA L+ DMAHISGLVAA    +PFE+CH+VTTTTHK+LRG RAGMIFYR           +  +Y+ E  IN AVFP   GG
Sbjct:  148 HLTHGFMT-GKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGG 303          

HSP 2 Score: 30.4166 bits (67), Expect = 6.644e-50
Identity = 15/25 (60.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  +AVALKQA T  FK Y  QV
Sbjct:  307 HAIAGVAVALKQAMTLEFKVYQHQV 331          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.654e-50
Identity = 96/157 (61.15%), Postives = 113/157 (71.97%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   KKISA SI+FE++PY++N STGYIDYD+LE+ A  FRPKLI+ G SAY R +DYAR R V DK  A+LL DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E  +YD+EDKIN AVFP   GG
Sbjct:  178 HLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKE-VLYDYEDKINQAVFPGLQGG 332          

HSP 2 Score: 33.4982 bits (75), Expect = 8.654e-50
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  LAVALKQA+T  +KAY +QV
Sbjct:  336 HTITGLAVALKQATTAEYKAYQEQV 360          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.916e-49
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   KKISA SI+FE++PY+++ STGYIDYD+LE+ A  FRPKLI+ G SAY R +DYAR R V DK  A+LL DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E   YD+EDKIN AVFP   GG
Sbjct:  178 HLSHGYQTDT-KKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGG 332          

HSP 2 Score: 35.4242 bits (80), Expect = 1.916e-49
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  LAVALKQA+TP ++AY +QV
Sbjct:  336 HTITGLAVALKQATTPEYRAYQEQV 360          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.918e-49
Identity = 94/157 (59.87%), Postives = 109/157 (69.43%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHG+ T   KKISATSI+FES+ YKVN  TGYIDYD+LEE A  F PKLII G S Y R+ DY R R +AD+ GA L+ DMAHISGLV A    +PFE+CH+VTTTTHK+LRG RAGMIFYR           +  +Y+ E  IN AVFP   GG
Sbjct:  148 HLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 303          

HSP 2 Score: 35.039 bits (79), Expect = 1.918e-49
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  +AVALKQA TP FK Y +QV
Sbjct:  307 HAIAGVAVALKQAMTPEFKEYQRQV 331          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.918e-49
Identity = 94/157 (59.87%), Postives = 110/157 (70.06%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHG+ T   KKISATSI+FES+PYKVN  TGYI+YD+LEE A  F P+LII G S Y R+ DYAR R +AD  GA L+ DMAHISGLVAA    +PFE+CH+V+TTTHK+LRG RAGMIFYR           +   Y+ E  IN AVFP   GG
Sbjct:  148 HLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGG 303          

HSP 2 Score: 35.8094 bits (81), Expect = 1.918e-49
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  +AVALKQA TP F+AY +QV
Sbjct:  307 HAIAGVAVALKQAMTPEFRAYQRQV 331          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.498e-49
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   KKISA SI+FE++PY++N STGYIDYD+LE+ A  FRPKLI+ G SAY R +DYAR R V DK  A++L DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E   YD+EDKIN AVFP   GG
Sbjct:  178 HLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGG 332          

HSP 2 Score: 33.4982 bits (75), Expect = 2.498e-49
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  LAVALKQA+T  +KAY +QV
Sbjct:  336 HTITGLAVALKQATTAEYKAYQEQV 360          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 3.258e-49
Identity = 93/157 (59.24%), Postives = 109/157 (69.43%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHG+ T   KKISATSI+FES+PYKVN  TGYI+YD+LEE A  F P+LII G S Y R+ DYAR R +AD  GA L+ DMAH+SGLVAA    +PFE+CH+V+TTTHK+LRG RAGMIFYR               Y+ E  IN AVFP   GG
Sbjct:  148 HLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGG 303          

HSP 2 Score: 35.8094 bits (81), Expect = 3.258e-49
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  +AVALKQA TP F+AY +QV
Sbjct:  307 HAIAGVAVALKQAMTPEFRAYQRQV 331          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.215e-49
Identity = 90/157 (57.32%), Postives = 108/157 (68.79%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   +KISA S YFES PY+VN  TG IDYD LE+ A+ +RPK+++ G SAY R  DY R R +ADKCGA L+ DMAHISGL+AA    +PFEY  IVTTTTHKSLRGPR  MIF+R           +  +YD E+ INF+VFP   GG
Sbjct:  139 HLSHGYATEN-RKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSINPKTGKEVLYDLENPINFSVFPGHQGG 294          

HSP 2 Score: 35.8094 bits (81), Expect = 7.215e-49
Identity = 17/25 (68.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I ALA ALKQA+TP FK Y  QV
Sbjct:  298 HTIAALATALKQAATPEFKEYQTQV 322          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.395e-49
Identity = 94/157 (59.87%), Postives = 111/157 (70.70%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   KKISA SI+FE++PY+++ STGYIDYD+LE+ A  FRPKLI+ G SAY R +DY R R V +K  A+LL DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIFYR           E   YD+EDKIN AVFP   GG
Sbjct:  178 HLSHGYQTDT-KKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKE-VFYDYEDKINQAVFPGLQGG 332          

HSP 2 Score: 35.4242 bits (80), Expect = 9.395e-49
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  LAVALKQA+TP ++AY +QV
Sbjct:  336 HTITGLAVALKQATTPEYRAYQEQV 360          
The following BLAST results are available for this feature:
BLAST of EY719586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI4.319e-5261.64Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_PONAB6.644e-5061.78Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYN_FLAPR8.654e-5061.15Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_PEA1.916e-4960.51Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_RABIT1.918e-4959.87Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_SHEEP1.918e-4959.87Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYM_FLAPR2.498e-4960.51Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_BOVIN3.258e-4959.24Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_YEAST7.215e-4957.32Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYM_SOLTU9.395e-4959.87Serine hydroxymethyltransferase, mitochondrial OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-104-B07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719586 ID=EY719586; Name=EY719586; organism=Citrus sinensis; type=EST; length=1018bp
GCATTTGACTCATGGGTATTACACTTCTGGCGGGAAAAAGATATCGGCGA
CTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTGAATTCGAGTACTGGG
TATATTGATTACGATAAGTTGGAGGAGAAGGCGTTGGATTTTAGGCCGAA
GTTGATCATTTGCGGTGGGAGTGCGTATCCGAGGGACTGGGATTATGCTA
GATTCAGAGCTGTTGCTGATAAGTGTGGTGCCCTTTTGCTCTGTGATATG
GCTCATATCAGTGGCCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGA
GTACTGTCACATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTA
GGGCTGGTATGATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGC
CAGCCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGT
CTTCCCATCCCCTTCAGGTGGGTCCTCACAACCCACCAGATTGGTGCTCT
AGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGA
AACAGGTCCGGGGCCAATGGCCAGTTTGCACCTTTGGGGAACTACCTGAC
GGGGCAAGGGATACAGCCTTTGGCACTGGAGGGAACTGGAAAACCACCCT
TGGTTCTCCTGGGATTCTACGCCCCTCCTTGGATTTGGCTGGGCAATAAA
GGTGAAAAAGGTTCTGGTGGACCTTTGGCAAATTTACTGGGGACACAGAA
TGGCTGGTGTTTGGGGGGCATCATGGTGCCTTGGGGCCCCCTGGAAAGAA
AAAAAAATTCGAAGTACCCCTGACCTAGGAATTCCCGAAATTTTATGTTG
AGCAAAGAGAATACCAATATACAACGGTGAAAGTACTATATTCCCCAGAG
GCTTTGGACACCTCCCCTGCCCTACGGAAAATATCCATGATGGGGAGGTA
TGGGTCGAACGCCCTTTCGATGGGACAGGAGATCTATTCTGTCCTGGCAG
CGTGTGCCGGGAGGGGGG
back to top