EY719583

Overview
NameEY719583
Unique NameEY719583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEFS (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain SBW25) GN=rdgC PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.266e-49
Identity = 103/126 (81.75%), Postives = 103/126 (81.75%), Query Frame = -2
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWFKNLLIYRLTQDLPVD            ARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST
Sbjct:    1 MWFKNLLIYRLTQDLPVDAEALEAAMATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDALKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 126          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEPF (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain Pf0-1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.396e-48
Identity = 102/126 (80.95%), Postives = 103/126 (81.75%), Query Frame = -2
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWFKNLLIYRLTQDLPVD            ARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLI+ARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST
Sbjct:    1 MWFKNLLIYRLTQDLPVDAEALETALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLISARKEERILPGSVVRDAVKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 126          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEF5 (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rdgC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.490e-47
Identity = 99/126 (78.57%), Postives = 101/126 (80.16%), Query Frame = -2
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWFKNLLIYRLTQDLP D            ARPCASQELTTYGFVAPFGKGEDAPLVHVS DF+L+AARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST
Sbjct:    1 MWFKNLLIYRLTQDLPFDAEALETALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSQDFMLVAARKEERILPGSVVRDAVKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 126          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSESM (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. tomato GN=rdgC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.597e-44
Identity = 94/126 (74.60%), Postives = 99/126 (78.57%), Query Frame = -2
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWFKNLLIYRLTQD+P D            AR CASQE+ TYGFVAPFGKGEDAPLVH+S DFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQAFLPRAFIRRS+T
Sbjct:    1 MWFKNLLIYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFLLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSAT 126          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSE14 (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rdgC PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.086e-44
Identity = 93/126 (73.81%), Postives = 99/126 (78.57%), Query Frame = -2
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWFKNLL+YRLTQD+P D            AR CASQE+ TYGFVAPFGKGEDAPLVH+S DFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQAFLPRAFIRRS+T
Sbjct:    1 MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFLLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSAT 126          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEU2 (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rdgC PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.558e-44
Identity = 92/126 (73.02%), Postives = 99/126 (78.57%), Query Frame = -2
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWFKNLL+YRLTQD+P D            AR CASQE+ TYGFVAPFGKGEDAPLVH+S DF+LIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQAFLPRAFIRRS+T
Sbjct:    1 MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFMLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSAT 126          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEE4 (Recombination-associated protein rdgC OS=Pseudomonas entomophila (strain L48) GN=rdgC PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.766e-43
Identity = 93/124 (75.00%), Postives = 96/124 (77.42%), Query Frame = -2
Query:   29 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRS 400
            MWFKNLL YRLTQD+P +            ARPCASQELTTYGFVAPFGKG DAPLVHVSG+FLLIAARKEERILP SVV D           EQMRKVYKKERDQIKDEIIQAFLPRAFIRRS
Sbjct:    1 MWFKNLLTYRLTQDVPFEPEALEAALASKPARPCASQELTTYGFVAPFGKGADAPLVHVSGEFLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAFIRRS 124          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEPK (Recombination-associated protein rdgC OS=Pseudomonas putida (strain KT2440) GN=rdgC PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.306e-43
Identity = 92/124 (74.19%), Postives = 97/124 (78.23%), Query Frame = -2
Query:   29 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRS 400
            MWFKNLL YRLTQ++P +            ARPCASQELTTYGFVAPFGKGEDAPLVHVSG++LLIAARKEERILP SVV D           EQMRKVYKKERDQIKDEIIQAFLPRAFIRRS
Sbjct:    1 MWFKNLLTYRLTQEVPFEPEALEAALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVSGEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAFIRRS 124          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEPG (Recombination-associated protein rdgC OS=Pseudomonas putida (strain GB-1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.306e-43
Identity = 92/124 (74.19%), Postives = 97/124 (78.23%), Query Frame = -2
Query:   29 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRS 400
            MWFKNLL YRLTQ++P +            ARPCASQELTTYGFVAPFGKGEDAPLVHVSG++LLIAARKEERILP SVV D           EQMRKVYKKERDQIKDEIIQAFLPRAFIRRS
Sbjct:    1 MWFKNLLTYRLTQEVPFEPEALEAALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVSGEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAFIRRS 124          
BLAST of EY719583 vs. ExPASy Swiss-Prot
Match: RDGC_PSEAE (Recombination-associated protein rdgC OS=Pseudomonas aeruginosa GN=rdgC PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 8.763e-43
Identity = 89/126 (70.63%), Postives = 96/126 (76.19%), Query Frame = -2
Query:   23 MWFKNLLIYRLTQDLPVDXXXXXXXXXXXXARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSST 400
            MWF+NLL+YRLTQDL +D            ARPCASQELTTYGF APFGKG DAPLVHVS DF LI+ARKEERILPGSVVRD           +QMRKVYKKERDQ+KDEI+Q  LPRAFIRRSST
Sbjct:    1 MWFRNLLVYRLTQDLQLDADSLEKALGEKSARPCASQELTTYGFTAPFGKGPDAPLVHVSQDFFLISARKEERILPGSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIRRSST 126          
The following BLAST results are available for this feature:
BLAST of EY719583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
RDGC_PSEFS6.266e-4981.75Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEPF1.396e-4880.95Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEF54.490e-4778.57Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSESM1.597e-4474.60Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSE142.086e-4473.81Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEU23.558e-4473.02Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEE41.766e-4375.00Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEPK2.306e-4374.19Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEPG2.306e-4374.19Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEAE8.763e-4370.63Recombination-associated protein rdgC OS=Pseudomon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-104-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719583 ID=EY719583; Name=EY719583; organism=Citrus sinensis; type=EST; length=1007bp
GGACCGGGGTCCGGAAATTCCGGGTCGACGAGCGACGGATGAACGCGCGC
GGCAGGAAGGCCTGGATGATTTCATCCTTGATCTGGTCGCGTTCCTTTTT
GTAGACCTTGCGCATTTGCTCGGCTTCGATCTCTTCGACCTTTTCCTTCA
CCGCATCACGCACCACGCTGCCCGGCAGGATACGTTCTTCCTTGCGCGCA
GCGATCAGCAGGAAATCACCGCTGACGTGCACCAGGGGCGCGTCTTCGCC
TTTACCGAAAGGGGCGACGAAACCGTAAGTGGTCAACTCCTGGCTTGCAC
AAGGGCGCGCCAGTTTGGTGGCCAGTGCAGTTTCCAACGCCTCGGCATCA
ACAGGCAGATCTTGGGTCAGGCGATAGATAAGCAGGTTTTTGAACCACAT
GGGGTGAGTCTCTCCTTATATACAAAGGGGGGCATTATTCTCCTCATGGC
GTCATAGGCCAACCCTCGCTAAGCCATTGGAAGGCCTGAAAAAAATTATT
TAAGAAAGTGCTTGCCAGACCATGGGTCGCTCCGTAAAATGCGCGCCACA
CCGAAAGTGAAGGGGGAATAAGCTTCAGCTGGGAAAGCTCCGGCCTTAAA
AGCAGAAAGTCGGGGGTTCAAACGCGCTACATACCGTCCATTCAGATTAC
AAGGGGAAAGCGACAAGAAATGAAGGTGTGGGTATACAGAGCACGTGTGT
AAAGTAAGAGTGTAATGGTTTGAAAATTACGAGAGACATGTACATCATTT
GATAAGTATGTGTAGAGAGGATGTGGAGGATATATCAGAAGACATTATAT
AAAGATCAAAGCGTGTTATTATTCTAGTAAGATATTATTGTTGAATATAG
GGTGTAGTAAGTTTATAATAATAGAAGAAAGTTAGTGATTAATATTAGTG
AGCGTTAATAGAGTAGCGAAAAGAGAATAATTATGTGGAATAAGATGGGA
AAGAAAAGAAAAAGAAAAAAAGAGCAGAGACAAAATAAAAGAAAGAATAA
AAAAAAT
back to top