FC923012

Overview
NameFC923012
Unique NameFC923012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923012 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.996e-18
Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  345 TLNLLPNLENSAEISRVQNVKASDFFANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKASSSNAVVNP-ELNNNSQTV--------------------------PIARRASLHRFFEKRKDRAIARAPYQVNCP 725
            T++L P  E S   S VQ+VK ++ F   P+F+S++S                 + E  ++ +TI YAG+V VFND SAEKAKE++ LA+K ++++   N  ++ +N  T+                          PIARRASLHRF EKRKDR  ++APYQ+  P
Sbjct:   66 TMSLFP-CEASNMDSMVQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDP 231          
BLAST of FC923012 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.424e-15
Identity = 54/134 (40.30%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  432 PTFASNNSVNE----ARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKASSSNAV-----VNPELNNN--SQTVP---------------------------IARRASLHRFFEKRKDRAIARAPYQVN 719
            P+ +S   V +    + ++ GSSQ+TI + GKV V+N+   +KAKEIM +A +A     +     +N E NNN  S  +P                           IARRASLHRFF KRKDRA+ARAPYQVN
Sbjct:   75 PSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVLPDLNEPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDRAVARAPYQVN 208          
BLAST of FC923012 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.135e-15
Identity = 56/112 (50.00%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  474 EHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKAS-----SSNA----------VVNPELN------NNS--------QTVP-IARRASLHRFFEKRKDRAIARAPYQVN 719
            E G+SQ+TI + GKV VFN+   +KAKEIM +A +A+     S N+          VV P+LN      NN         Q V  IARRASLHRFF KRKDRA+ARAPYQVN
Sbjct:  101 ESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPYQVN 212          
BLAST of FC923012 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.500e-14
Identity = 56/174 (32.18%), Postives = 80/174 (45.98%), Query Frame = 3
Query:  348 LNLLPNLENSAEISRVQ-NVKASDFFANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDTSAEKAKEIMALATKASSSN-AVVNPELNNNSQT-----------------------------------VPIARRASLHRFFEKRKDRAIARAPYQVN 719
            +NL P   +  + S  Q ++K    F    +F+S++S                 + E  S+ +TI Y G+V VF+D SAEKAKE++ LA K S+ +      E+NNN                                      +PIARRASLHRF EKRKDR  ++APYQ++
Sbjct:   58 MNLFPCEASGMDSSAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQID 231          
The following BLAST results are available for this feature:
BLAST of FC923012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TI10A_ARATH3.996e-1836.53Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH2.424e-1540.30Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
TI11B_ARATH4.135e-1550.00Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
TI10B_ARATH3.500e-1432.18Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3BC10RM1 SLH Citrus sinensis cDNA clone KN0AAM3BC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923012 ID=FC923012; Name=FC923012; organism=Citrus sinensis; type=EST; length=800bp
GATTCATCTCCATACGTATGAAGGCAGAATCAGATTTTTCTTGTGCACTC
AAAATTAATCAACAGAAACTTTCTCTGTCTTCTCAGTTCTTACACAGGGC
AGAACAAGCAACAGGCCATCATGTCGAGCTCAGGCCAAAAACCCAGCGTT
GCTCAGACTTGCAATCTTTTGAGTCAGTACTTTAAGGAAAATGGAAGATT
TGCAAATAAAGGTACGAGCTTGTTAATTTAATTTGTCTTTCTTTTTCATG
TGGGTTTTTTTGGGTTCCTTAAAGATTCCTTCTTGCAAAAACTTTTGCTG
ATATAAATATATTTTTTCTTTTTGATGATAATTCAGGTGTGGAAACACTG
AACTTGCTGCCGAACCTGGAAAATTCTGCGGAGATTTCAAGAGTACAGAA
TGTGAAAGCCAGTGATTTCTTCGCAAATATGCCAACTTTTGCTTCCAACA
ATTCCGTAAATGAAGCCAGAACGGAGCATGGAAGCTCTCAAATGACGATA
ATCTATGCCGGGAAAGTGTTCGTCTTCAACGACACTTCTGCGGAGAAGGC
AAAAGAAATCATGGCCTTAGCCACAAAAGCATCGAGCTCTAATGCTGTTG
TTAACCCGGAATTGAACAACAACTCTCAGACGGTGCCAATAGCAAGAAGA
GCTTCACTTCACCGTTTCTTTGAGAAAAGAAAAGACAGGGCTATAGCAAG
AGCTCCGTACCAAGTGAATTGTCCTTATTCATCAGTGGCTCCTGCTGCTG
CTGCTGCTCCTCCTCCTCCAAAGCCAAAGATCAAAGCAAGTACTCATGGC
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