EY749167

Overview
NameEY749167
Unique NameEY749167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY749167 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 3.179e-60
Identity = 105/121 (86.78%), Postives = 114/121 (94.21%), Query Frame = 3 
Query:   15 RKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSS 377
            +KMW+INQRIVK++VELMR +D PESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS
Sbjct:  981 QKMWKINQRIVKVLVELMRNHDRPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSS 1101

HSP 2 Score: 43.1282 bits (100), Expect = 3.179e-60
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 
Query:  367 IPVHSNQILSK*RRNGIPGSSLHYFNIDAITWQADIEKWLTWEAYSRLAPGMANSVS*YSCPRELGWNI 573
            IP+     L    +NG+   S  +FN  +I W+ADI+  L WEA+S L+  M       +  RELG  I
Sbjct: 1102 IPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFL-DTAARELGCTI 1169
[Close]
BLAST of EY749167 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 3.420e-56
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 3 
Query:   15 RKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN 389
            +KMWR+NQRIVKLI ELMR +DSPE+LVILASASDLLLRATDGMLVDGEACTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+
Sbjct:  972 QKMWRVNQRIVKLIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSS 1096

HSP 2 Score: 43.1282 bits (100), Expect = 3.420e-56
Identity = 18/50 (36.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:  373 VHSNQILSK*RRNGIPGSSLHYFNIDAITWQADIEKWLTWEAYSRLAPGM 522
            ++S++++    RNGI   +        I WQAD+E+ + WEA+SR A G+
Sbjct: 1093 INSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGL 1142
The following BLAST results are available for this feature:
BLAST of EY749167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH3.179e-6086.78Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ3.420e-5678.40Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-066-G07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY749167 ID=EY749167; Name=EY749167; organism=Citrus sinensis; type=EST; length=861bp
CCCACCCACGCGTCCGGAAGATGTGGAGAATCAACCAGCGGATTGTAAAA
CTTATTGTGGAGCTGATGAGAATTTATGATAGTCCAGAGTCACTGGTAAT
ATTGGCAAGCGCATCAGATCTGCTTCTACGTGCCACAGACGGGATGCTTG
TTGATGGTGAAGCTTGCACACTGCCACAACTTGAGTTACTGGAAGCAACA
GCTAGAGCAATTCAGCCCATCCTGCGGTGGGGAAAGTCTGGATTAGCAAT
TGCAGATGGTCTTTCAAACCTTTTAAAGTGTCGTCTACCTGCAACGATCC
GATGCCTTTCTCATCCAAGTGCCCATGTCCGCGCACTGAGCACTTCAGTT
CTTCGTGACTTTTTACATACCAGTTCATTCAAATCAAATATTGAGCAAGT
AAAGAAGAAATGGCATCCCTGGGTCTTCCTTACACTACTTCAATATTGAT
GCAATTACCTGGCAAGCTGACATCGAAAAATGGTTAACTTGGGAAGCTTA
TAGCCGACTTGCACCGGGAATGGCGAATTCAGTTTCTTGATATTCCTGCC
CAAGGGAATTAGGTTGGAACATAATCTATATCGAAATAAATTAACCCTAC
CGCCGGTCTTTGGAGGGTTGGTAATTATAATTTATTTTTTCCCCAGGGAA
ATTTTTGGGGAGGGGTAATTACCCAAATCCATTGGCTCTTGAAAAAACAA
AATAAAAAACAAAAAAAAAAAAAAAAACAGGGGGCGGGCCCGCCCTTTTT
TTTTCTTATTTTTTCTTTTTTATTTTTCTCTCACCACACCCACATCCCCT
CCCCACCGACCGACAAGCCAAGCAACATACCCAACCCTCCCCGCCTCCTT
CGCCCGGCCCA
back to top