EY749160

Overview
NameEY749160
Unique NameEY749160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY749160 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.015e-23
Identity = 49/66 (74.24%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   12 GHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 209
            GHICLDILYDSWSPAMTV              T KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:   96 GHICLDILYDSWSPAMTVSSICISILSMLSSSTEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of EY749160 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 48/66 (72.73%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   12 GHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 209
            GHICLDILYDSWSPAMTV                KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:   96 GHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of EY749160 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.000e-22
Identity = 48/66 (72.73%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   12 GHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 209
            GHICLDILYDSWSPAMTV                KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:   96 GHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of EY749160 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   12 GHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 209
            GHICLD+LYDSWSPAM +              +VKQ+P+DND Y+KNC++GRSPKETRW FHDDKV
Sbjct:   96 GHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161          
BLAST of EY749160 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   12 GHICLDILYDSWSPAMTVXXXXXXXXXXXXXXTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 209
            GHICL ILYD+WSPA+TV              T K RP D+ +YV    N +SPKE RW FHDD V
Sbjct:   85 GHICLSILYDNWSPALTVSSVCLSILSMLSGCTEKIRPTDDSKYVSRVLN-KSPKEVRWMFHDDTV 149          
The following BLAST results are available for this feature:
BLAST of EY749160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBC16_ARATH2.015e-2374.24Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC15_ARATH5.863e-2372.73Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC18_ARATH1.000e-2272.73Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC17_ARATH3.011e-1962.12Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2W_DICDI1.769e-1151.52Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-066-F12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY749160 ID=EY749160; Name=EY749160; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGGGTCATATTTGCTTAGATATCCTGTACGATTCATGGTCC
CCAGCCATGACTGTTAGTTCCATTTGTATCAGTATTCTCTCCATGCTATC
AAGCTCCACTGTAAAGCAACGTCCTGAAGATAACGACCGCTATGTGAAGA
ACTGCAGAAATGGCCGATCTCCTAAGGAGACTAGGTGGTGGTTCCATGAT
GATAAAGTGTAATAAGCAAATTATCCTCTCTCATCAATCAGTTTAAATAA
TTAGTGTAGGTGGCTTCCTATTTTAAAGGAAATGAAAGCAGAAGAGTAAA
AGACTAAAGAAGCATTCTGTAAATGTTTTTTGGGCTCTTTGCTTAAATAA
CTCCTGTAAATGGCAATGCCTGGTATCTATCTGCAAAGAGTTACTTTTAT
GTTTTTAGCGGTGTGAAAGGATCAAACTTCATCAGGTCTTTGGGGTTAAA
CCCACGGCGAGATGTACTTGGTACATTGTGAAATTGAAAATTTGAAATCT
TCCTGTAATTATTCTCATAACTCTGTAAGTTGGCTGCTCTGGTGATTTCT
CATGGAATACCATTTGCCTCCAAACAATTCTAAAAAGTTAACCTTTTTTT
TTTAAACAAAAACACAAAACCATCCACCACCTCATACAGAACCAACAATA
ACAAGAAGAAATAAACAAGGGGGGGGGCCGCCCTTAAAAGAAAAACAGTT
TTTAACAAGGCCGCCGCGGGCGAGAACACTAACGCTTTTTATAAAGGGCC
ACCAAAAATTCCAATATCCCGGGCCGGTCAGTTTTTTAAACGCTCCCACG
AGGGCGGGGAAAAACACAGTGATAATGACCCCCGACGTAATAACCG
back to top