EY697364

Overview
NameEY697364
Unique NameEY697364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.299e-65
Identity = 123/146 (84.25%), Postives = 136/146 (93.15%), Query Frame = 2
Query:   35 EMFPQETLSGAPASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEPVDGS--EGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 466
            ++FPQET++ A +  LG+L+FLRNN QFQ LR+MV SNPQILQPMLQELGKQNPQLLRLIQE+QAEFLQL+NEP +GS  EGDMFDQPEQ+MPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN+GDFED
Sbjct:  226 DLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.582e-59
Identity = 111/146 (76.03%), Postives = 131/146 (89.73%), Query Frame = 2
Query:   35 EMFPQETLSGAPASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEPVDGSEG--DMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 466
            ++FPQE +S A    LG+L+FLR N QFQ LRSMV SNPQILQPMLQELGKQNPQLLRLIQE+QAEFLQL+NEP +GS+G  D+FDQP+Q+MPH++NVTP EQE+I+RLEAMGFDRA+VIEAFL+CDRNEELAANYLLE++ DFED
Sbjct:  223 DLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.906e-50
Identity = 97/143 (67.83%), Postives = 121/143 (84.62%), Query Frame = 2
Query:   38 MFPQETLSGAPASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEPVDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 466
            +FPQ   +    +G G+LDFLRN+QQFQALR+MVQ+NPQILQPMLQELGKQNPQL+RLIQEHQA+FL+LINEPV+G E ++ +Q E  MP A+ VTP E+EAI+RLE MGFDRA+V+E F AC++NEELAANYLL++  +FED
Sbjct:  236 LFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.218e-45
Identity = 93/148 (62.84%), Postives = 118/148 (79.73%), Query Frame = 2
Query:   35 EMFPQETLSGAPASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEPVD--GSEGDMFDQPEQDM--PHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 466
            ++FPQ   +     G G+LDFLRN+QQFQALR+MVQ+NPQ+LQPMLQELGKQNP L+RLIQ+HQA+FL+LINEPV+  G  G++  Q    M  P AI VT  E+EAI+RLEAMGF+RALV+E F AC++NEELAANYLL++  +FE+
Sbjct:  272 DLFPQGLPNVGGNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.452e-44
Identity = 90/148 (60.81%), Postives = 116/148 (78.38%), Query Frame = 2
Query:   26 IFPEMFPQETLSGAPASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEPVDG-SEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 466
            +FP+  P    +   A+GLG+LD LRNN QF+ L S+VQ+NPQILQP+LQELGKQNPQ+L+LIQE+QAEFL LINEP +G  E ++ DQ  + MP  I VTP E EAI RLEAMGFDRALV++ F AC+++E+LAANYLL++  +F+D
Sbjct:  244 LFPQALPN---ASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.169e-28
Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   71 ASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEPVD----------GSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 457
            +SG   L+FLRN  QFQ +R ++Q NP +L  +LQ++G++NPQLL+ I +HQ  F+Q++NEPV           G  G + +     M + I VTP E+EAI+RL+A+GF   LVI+A+ AC++NE LAAN+LL+   D
Sbjct:  270 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNY-IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFD 407          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.363e-28
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = 2
Query:   71 ASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 463
            A+G   L+FLR+  QFQ +R ++Q NP +L  +LQ+LG++NPQLL+ I  HQ +F+Q++NEP         V+G  G + ++  Q   + I VTP E+EAI+RL+A+GF  +LVI+A+ AC++NE LAAN+LL    D E
Sbjct:  226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.363e-28
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = 2
Query:   71 ASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 463
            A+G   L+FLR+  QFQ +R ++Q NP +L  +LQ+LG++NPQLL+ I  HQ +F+Q++NEP         V+G  G + ++  Q   + I VTP E+EAI+RL+A+GF  +LVI+A+ AC++NE LAAN+LL    D E
Sbjct:  226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.223e-27
Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = 2
Query:   71 ASGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEPVD----------GSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 457
            +SG   L+FLRN  QFQ +R ++Q NP +L  +LQ++G++NPQLL+ I +HQ  F+Q++NEPV           G  G + +     M + I VTP E+EAI+RL+A+GF   LVI+A+ AC++NE LAAN+LL+   D
Sbjct:  269 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNY-IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFD 406          
BLAST of EY697364 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.724e-27
Identity = 63/139 (45.32%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   74 SGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQAEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 463
            +G   L+FLR+  QFQ +R ++Q NP +L  +LQ+LG++NPQLL+ I  HQ +F+Q++NEP         V+G  G + ++  Q   + I VTP E+EAI+RL+A+GF  +LVI+A+ AC++NE LAAN+LL    D E
Sbjct:  226 AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362          
The following BLAST results are available for this feature:
BLAST of EY697364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23A_ARATH4.299e-6584.25Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH1.582e-5976.03Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23D_ARATH3.906e-5067.83Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.218e-4562.84Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ2.452e-4460.81Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_HUMAN7.169e-2845.32UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23A_MOUSE9.363e-2845.71UV excision repair protein RAD23 homolog A OS=Mus ... [more]
RD23A_HUMAN9.363e-2845.71UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23B_BOVIN1.223e-2745.32UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_BOVIN2.724e-2745.32UV excision repair protein RAD23 homolog A OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-059-D07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY697364 ID=EY697364; Name=EY697364; organism=Citrus sinensis; type=EST; length=793bp
TGCGTAGACCCACGCGTCCGAATTCATCTTTCCCGAAATGTTTCCTCAGG
AGACCCTTTCAGGTGCTCCTGCTAGCGGACTTGGATCTCTCGACTTCCTT
AGAAACAATCAACAGTTTCAAGCATTGCGTTCAATGGTGCAATCAAATCC
GCAAATTTTGCAGCCCATGCTTCAGGAGCTTGGAAAACAAAACCCTCAGT
TATTAAGATTAATCCAAGAGCACCAGGCAGAGTTCCTTCAGTTAATAAAT
GAGCCTGTTGATGGTTCTGAAGGAGATATGTTTGATCAGCCTGAGCAAGA
CATGCCTCATGCAATTAATGTTACCCCAGCCGAACAGGAAGCTATCCAAC
GACTTGAAGCAATGGGGTTCGATAGAGCCCTTGTCATTGAGGCGTTTTTG
GCATGTGATCGTAACGAGGAATTGGCAGCTAACTACCTATTGGAAAATGC
TGGAGATTTCGAGGATTGAGCCGATGAACATAATTTCCCATCGGCTTCAT
AGTTTTGATTTCTTTTTCTTTTTTTTTTTTTTAGATAAATTTCTAATTTT
TTTTCCTGGGCATCTTTACTTGAGTAGTGTCTGGATTTATTAATTAATTG
AGTCCGACGATAAAGCCTGGCAATTAATTTATAGTTTTCGGATTTAGATG
GATCTTTATCACCATCTTACTTGGATATGGTTTTGATTGAATATTGATCA
AAACGTATGAAATGTGATTATGATGAATTAGGAAAAATCATTTTGAGCAT
TTGTTAAAANCCCCNCCATACCCGCTGAAGNTCCAAAAAACCC
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