EY697237

Overview
NameEY697237
Unique NameEY697237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY697237 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 48/112 (42.86%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   13 AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDARQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 348
            +YN+++ ++  VP+E Y  F+D+LA +++++IA CSEK++  LS+KDA ++LLF  + +  +Y+KE +  W+++   + F    +     EIPSLQLI+QTL YA+ELERIV
Sbjct:  156 SYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIKERN--WKVQGDVIQF--GNNDNQTVEIPSLQLIHQTLHYAKELERIV 263          
BLAST of EY697237 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   13 AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDARQMLLFTSDQELLEYVKEEHPEWEM-KDGFVFFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 348
            +YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F + +++ +Y K+    W +  + +  F   +       IPS +L  Q + YAR+LE IV
Sbjct:  147 SYNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 257          
BLAST of EY697237 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.397e-16
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   13 AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDARQMLLFTSDQELLEYVKEEHPEWEM-KDGFVFFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 348
            +YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F + +++ +Y K+    W +  + +  F   +       IPS +L  Q + YAR+LE IV
Sbjct:  147 SYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 257          
BLAST of EY697237 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-16
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   13 AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDARQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 348
            +YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F + +++ +Y K+    W +  + +  F   +       IPS +L  Q + YAR+LE IV
Sbjct:  147 SYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGINNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 257          
BLAST of EY697237 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.064e-16
Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   13 AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDARQMLLFTSDQELLEYVKEEHPEWEM-KDGFVFFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 348
            +YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F++ +++ +Y K+    W +  + +  F   +       IP  +L  Q + YAR+LE IV
Sbjct:  147 SYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKR--GWVLGPNNYYSFASQQQKPEDSTIPFTELAKQVIEYARQLEMIV 257          
BLAST of EY697237 vs. ExPASy Swiss-Prot
Match: PSMD8_CAEEL (26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.353e-11
Identity = 38/113 (33.63%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   13 AYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDARQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQKAKDSAPCKEIPSLQLINQTLSYARELERIV 348
            AYN+V+  ++N+P+  Y  F+ ++  T+R EIA   EK++  L+ KDA  MLLF +D+++ ++ +E   +W +  + +VF  +     P   + ++++  QTL YA++LE+IV
Sbjct:  141 AYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQER--KWHLDGERYVFEIEVAQEKPV-NLDTVRVATQTLFYAKQLEQIV 250          
The following BLAST results are available for this feature:
BLAST of EY697237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSMD8_DICDI5.480e-2142.86Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD8_PONAB8.189e-1738.0526S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_HUMAN1.397e-1638.0526S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_BOVIN1.824e-1638.0526S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_MOUSE4.064e-1637.1726S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_CAEEL1.353e-1133.6326S proteasome non-ATPase regulatory subunit 8 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-057-H03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY697237 ID=EY697237; Name=EY697237; organism=Citrus sinensis; type=EST; length=622bp
CCACGCGTCCGGGCTTATAATCGTGTCTTGAGTGCCAAACAGAATGTACC
TAATGAAACTTATGGTTATTTCATGGATCTCCTAGCTAAGACAGTAAGAG
ATGAGATAGCTGGATGTAGTGAGAAGGCATATGATTATCTTTCAATTAAA
GATGCCCGCCAAATGTTGCTGTTCACTTCTGACCAAGAGCTTTTGGAATA
TGTCAAGGAGGAGCACCCTGAGTGGGAGATGAAGGATGGATTTGTATTTT
TCCAGAAGGCAAAAGATTCTGCACCTTGCAAGGAGATACCGTCTTTGCAG
CTCATCAACCAGACACTCAGTTATGCTAGAGAGTTGGAGCGGATTGTTTA
AACAGCATTCCTTTGCTTCATTATTGTTTTGGCTTCTATTTTCATCACTC
CAAGCTGTTTGCAGTGCCATTAAACTTAAAATTGTTGTTCATTTTTGTAT
TATTTTTTTACGTGGCCATTTGGATGGGACATTTTCATTGAACCCGTGTT
TTAGTTAGCATGAGCTCGGGTTGAAACTTTTGACATTGACCCGTGTTTTA
AGCAAGATTATTTTCTTGTTAAATATTGTAAACTGGTCTTATCTCATCGG
CAAAAAAAAAAAAAAAAAAAAA
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