FC922827

Overview
NameFC922827
Unique NameFC922827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922827 vs. ExPASy Swiss-Prot
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.527e-24
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1
Query:  394 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG--GGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERG------VCNICGGYSFVLC 735
            +RVV+YFTSLR +R T+EDC  +R IL+   +++DERD+SM S F +EL+ +L G       +TLPRVF+G +Y+GGVEE+++LNE GEL+K ++     E G       C  CG   FV C
Sbjct:  225 ERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPC 346          
BLAST of FC922827 vs. ExPASy Swiss-Prot
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  394 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILG-----GGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERG------VCNICGGYSFVLC 735
            +RV++YFTSLR +R T+E+   VR IL+   +++DERD+SM S F +EL+ +LG     G G   +TLPRVF+G +YIGG EE+R+LNE G+L+K + G    E         C  CG   FV C
Sbjct:  251 ERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGVG---ITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVRFVPC 372          
BLAST of FC922827 vs. ExPASy Swiss-Prot
Match: GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  382 PGAD---QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAER-GVCNICGGYSFVLC 735
            P AD    RVV+Y T LRVVR+TFE C+ VR I +  RV+ +E++++++  +  EL        ++  +LP VFI G Y+GG E++  +NE+GEL+  +  +   +    C  CGG+ F+ C
Sbjct:  130 PSADLEFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSEAP-SLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPC 250          
BLAST of FC922827 vs. ExPASy Swiss-Prot
Match: GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  397 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAER-GVCNICGGYSFVLC 735
            RVV+Y T LRVVR+TFE C+ VR I +  RV+ +E++++++  +  EL        ++  +LP VFI G Y+GG E++  +NE+GEL+  +  +   +    C  CGG+ F+ C
Sbjct:  138 RVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSEAP-SLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPC 250          
BLAST of FC922827 vs. ExPASy Swiss-Prot
Match: GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 37/114 (32.46%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  397 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPA-AERGVCNICGGYSFVLC 735
            +VV+Y TS+ ++R T+  C  V+ ILR   V+ +ERD+ M   +  E++  +  G   ++ +P++++ G++IG  E V ++NE+GEL++ ++   + A    C  CGGY  + C
Sbjct:  306 KVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQSG---QVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQTCGGYRLLPC 416          
BLAST of FC922827 vs. ExPASy Swiss-Prot
Match: GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  397 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPA-AERGVCNICGGYSFVLC 735
            +VV+Y TS+ ++R T+  C  V+ ILR   ++ +ERD+ M   +  E++  +       + +P++F+ G+ IG    V +LNE+GEL++ +    + A    C  CGGY  + C
Sbjct:  434 KVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMRERM---QDETIRVPQLFVEGQLIGDANIVERLNESGELRQLLRPYKSIATAYTCQTCGGYRMLPC 544          
The following BLAST results are available for this feature:
BLAST of FC922827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y5986_ARATH2.527e-2446.72Uncharacterized protein At5g39865 OS=Arabidopsis t... [more]
Y3885_ARATH1.174e-2145.60Uncharacterized protein At3g28850 OS=Arabidopsis t... [more]
GRCR1_MOUSE4.320e-1637.70Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_HUMAN9.625e-1637.72Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_DROME2.621e-1332.46Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR2_DROME6.456e-1231.58Glutaredoxin domain-containing cysteine-rich prote... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BF09RM1 SLH Citrus sinensis cDNA clone KN0AAM1BF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922827 ID=FC922827; Name=FC922827; organism=Citrus sinensis; type=EST; length=741bp
TCATTCTTCCTGTACAATTGCTCTTTACAAACCCAGGAAAAAATAATCAA
ATCAATGTGGCGGTCGTATATTACATCACCGGTTAAAATTCACAGCACGT
CATCACATTCACATTCGTCATTCCACTGCTCGTCCTTCAAAGATATCCAG
AGCCTCTGTACAGACGATCCCACCCCCCTTCACAATAACAATAACAACAA
TAATACATCGAGAAAGCCCTCTGTTTTCCACCGGGCCCGAATCGTCCACG
CCTTTATCCGCTCCTTGAAACCCGAAAGTGAATCCCCATTTAAACGCGAG
CCCAAAAATGAGACGTCGGCAGACGAAAATAACAAATATTCGCTACAAGT
TCAGCAGCAGCAGCAACCGACGATCAGGATCCCGGGAGCGGACCAACGCG
TTGTCGTATACTTCACGAGCCTGCGAGTCGTACGGTCGACCTTCGAAGAC
TGCAAGGCCGTCCGATCTATTCTCCGTGGATTTCGCGTGCAACTCGACGA
GCGGGATCTTTCCATGGACTCGAGTTTCTTGAACGAGTTACAAGGAATCC
TCGGCGGCGGTGGTCAAAGCAAGTTGACTCTGCCTAGGGTTTTTATCGGC
GGCAGGTACATCGGTGGAGTGGAGGAAGTCAGGCAACTTAACGAGACCGG
CGAGCTGAAGAAGTTCGTCGAAGGGTTGCCGGCGGCGGAGCGCGGCGTGT
GTAACATATGCGGCGGTTATAGTTTCGTTTTGTGCGGCGAA
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