FC922814

Overview
NameFC922814
Unique NameFC922814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922814 vs. ExPASy Swiss-Prot
Match: NIR_BETVE (Ferredoxin--nitrite reductase, chloroplastic OS=Betula verrucosa GN=NIR1 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.490e-85
Identity = 143/168 (85.12%), Postives = 161/168 (95.83%), Query Frame = 3
Query:  225 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLAD 728
            PRKWNVCVVGSHDL+EHPHINDLAYMPA KDGRFGFNLLVGGFFSP+RCAEA+PLDAWV+ADD+I VCKA+LEAYRDLG+RGNRQKTRMMWLIDELGIEGFR+EVV+RMP QEL+RA+ EDL+++QW+RR+ +GVHPQKQEG +YVGLHIPVGRVQA DMDELARLAD
Sbjct:  242 PRKWNVCVVGSHDLFEHPHINDLAYMPAIKDGRFGFNLLVGGFFSPRRCAEAVPLDAWVSADDIILVCKAILEAYRDLGTRGNRQKTRMMWLIDELGIEGFRSEVVKRMPNQELERAAPEDLIEKQWERRELIGVHPQKQEGLSYVGLHIPVGRVQADDMDELARLAD 409          
BLAST of FC922814 vs. ExPASy Swiss-Prot
Match: NIR_ARATH (Ferredoxin--nitrite reductase, chloroplastic OS=Arabidopsis thaliana GN=NIR1 PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.366e-83
Identity = 141/168 (83.93%), Postives = 156/168 (92.86%), Query Frame = 3
Query:  225 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLAD 728
            PRKWNVCVVG+HDLYEHPHINDLAYMPA KDGRFGFNLLVGGFFSPKRC EAIPLDAWV ADDV+P+CKAVLEAYRDLG+RGNRQKTRMMWLIDELG+EGFR EV +RMP  +L+R SSEDLV +QW+RRDY GV+PQKQEG ++VGLH+PVGR+QA DMDELARLAD
Sbjct:  245 PRKWNVCVVGTHDLYEHPHINDLAYMPANKDGRFGFNLLVGGFFSPKRCEEAIPLDAWVPADDVLPLCKAVLEAYRDLGTRGNRQKTRMMWLIDELGVEGFRTEVEKRMPNGKLERGSSEDLVNKQWERRDYFGVNPQKQEGLSFVGLHVPVGRLQADDMDELARLAD 412          
BLAST of FC922814 vs. ExPASy Swiss-Prot
Match: NIR_MAIZE (Ferredoxin--nitrite reductase, chloroplastic (Fragment) OS=Zea mays GN=NIR PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 8.288e-81
Identity = 138/168 (82.14%), Postives = 153/168 (91.07%), Query Frame = 3
Query:  225 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLAD 728
            PRKWNVCV+GSHDLYEHPHINDLAYMPA KDG FGFNLLVGGF SPKR AEA+PLDAWVA DDV+PVCKA+LEAYRDLGSRGNRQKTRMMWLIDELG+E FR+EV +RMP   L+RA+ EDLV ++W+RRDYLGVHPQKQEG +YVGLH+PVGR+QA DM ELARLAD
Sbjct:  227 PRKWNVCVIGSHDLYEHPHINDLAYMPAVKDGEFGFNLLVGGFISPKRWAEALPLDAWVAGDDVVPVCKAILEAYRDLGSRGNRQKTRMMWLIDELGMEVFRSEVEKRMPNGVLERAAPEDLVDKRWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMFELARLAD 394          
BLAST of FC922814 vs. ExPASy Swiss-Prot
Match: NIR_ORYSJ (Ferredoxin--nitrite reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0357100 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.482e-79
Identity = 135/168 (80.36%), Postives = 150/168 (89.29%), Query Frame = 3
Query:  225 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLAD 728
            PRKWNVCV+GSHDLYEHPHINDLAYMPA K G+FGFNLLVGGF SPKR  EA+PLDAWV  DD+IPVCKAVLEAYRDLG+RGNRQKTRMMWLIDELG+E FR+EV +RMP   L+RA+ EDL+ ++W RRDYLGVHPQKQEG +YVGLH+PVGRVQA DM ELARLAD
Sbjct:  256 PRKWNVCVIGSHDLYEHPHINDLAYMPAVKGGKFGFNLLVGGFISPKRWEEALPLDAWVPGDDIIPVCKAVLEAYRDLGTRGNRQKTRMMWLIDELGMEAFRSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGMSYVGLHVPVGRVQAADMFELARLAD 423          
BLAST of FC922814 vs. ExPASy Swiss-Prot
Match: NIR_SPIOL (Ferredoxin--nitrite reductase, chloroplastic OS=Spinacia oleracea GN=NIR PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.013e-78
Identity = 133/168 (79.17%), Postives = 155/168 (92.26%), Query Frame = 3
Query:  225 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLAD 728
            PRKWN CV+GSHDLYEHPHINDLAYMPATK+G+FGFNLLVGGFFS KRC EAIPLDAWV+A+DV+PVCKA+LEA+RDLG RGNRQK RMMWLIDELG+E FR EV +RMP Q L+RASSE+LVQ+ W+RR+YLGVHPQKQ+G ++VGLHIPVGR+QA +M+ELAR+AD
Sbjct:  254 PRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIAD 421          
BLAST of FC922814 vs. ExPASy Swiss-Prot
Match: NIR_SYNE7 (Ferredoxin--nitrite reductase OS=Synechococcus elongatus (strain PCC 7942) GN=nirA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.249e-48
Identity = 99/169 (58.58%), Postives = 121/169 (71.60%), Query Frame = 3
Query:  225 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAAD-DVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLAD 728
            PRK+N+ + G  D   H  INDLA+ PA +DG  GFN+ VGGFFS  R A AIPL+AWV AD  VI + +A+LE +RD GSRGNRQKTR+MWLIDE GIE FR +VV    G  L  A+ E +    W++RD+LGVHPQKQ G N+VGLH+PVGR+   D+ ELARLAD
Sbjct:  181 PRKFNIAIEGGRDNSIHAEINDLAFTPAYQDGTLGFNVWVGGFFSSTRVAPAIPLNAWVPADHSVIRLSRAILEVFRDNGSRGNRQKTRLMWLIDEWGIERFR-QVVSEAYGAPLAAAAPELM---DWEKRDFLGVHPQKQAGLNFVGLHVPVGRLTTEDLYELARLAD 345          
BLAST of FC922814 vs. ExPASy Swiss-Prot
Match: NIR_PHOLA (Ferredoxin--nitrite reductase OS=Phormidium laminosum GN=nirA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.296e-45
Identity = 88/168 (52.38%), Postives = 122/168 (72.62%), Query Frame = 3
Query:  225 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLAD 728
            PRK+N+ + G  D   H  IND+A++PA KDG+ GFN+LVGGFFS KRC  A+PL+AWV   DV+ +C+A+L  YR  G   NRQK+R+MWLIDE G++ FRAEV +++ G  L  A+ +D +   WD+RD++G+H QK+ G NYVGL +PVGR+ A  M +LAR+A+
Sbjct:  181 PRKFNIAIAGCRDNSVHAEINDIAFVPAYKDGKLGFNVLVGGFFSAKRCEAAVPLNAWVDPRDVVALCEAILIVYRITGCGANRQKSRLMWLIDEWGMDKFRAEVEQQL-GHPLQTAAPKDEI--LWDKRDHIGIHAQKKPGLNYVGLLVPVGRLYA-PMFDLARIAE 344          
The following BLAST results are available for this feature:
BLAST of FC922814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NIR_BETVE2.490e-8585.12Ferredoxin--nitrite reductase, chloroplastic OS=Be... [more]
NIR_ARATH1.366e-8383.93Ferredoxin--nitrite reductase, chloroplastic OS=Ar... [more]
NIR_MAIZE8.288e-8182.14Ferredoxin--nitrite reductase, chloroplastic (Frag... [more]
NIR_ORYSJ3.482e-7980.36Ferredoxin--nitrite reductase, chloroplastic OS=Or... [more]
NIR_SPIOL1.013e-7879.17Ferredoxin--nitrite reductase, chloroplastic OS=Sp... [more]
NIR_SYNE79.249e-4858.58Ferredoxin--nitrite reductase OS=Synechococcus elo... [more]
NIR_PHOLA4.296e-4552.38Ferredoxin--nitrite reductase OS=Phormidium lamino... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3AB07RM1 SLH Citrus sinensis cDNA clone KN0AAM3AB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922814 ID=FC922814; Name=FC922814; organism=Citrus sinensis; type=EST; length=731bp
GGTTATGATTTAAAGTTTAAGGGTCACAAGTTGTCTGGCTTTCTTTATAT
GAGCTCTGCTTCATATGAACTCTTCAATATAAGCAAATGATGAATAAAAC
GCATCGGTAACAGAAAGTTATCAAGTCTATGCGTGTTTTGTCGTGGATAC
AGAATTAACTTTTCATGTAAACGTACCGTTTAGCCGGTATCCCTCTTTCC
CATTTCGTTTTTCATTTGAGCAGGCCAAGGAAGTGGAATGTGTGTGTAGT
AGGATCACATGATCTTTATGAGCATCCTCACATCAATGATCTTGCTTACA
TGCCTGCTACAAAGGATGGAAGGTTTGGATTCAACTTGTTGGTGGGCGGG
TTCTTTAGTCCCAAGAGGTGTGCAGAGGCAATCCCTCTTGACGCCTGGGT
CGCAGCTGATGACGTTATCCCAGTTTGCAAAGCAGTACTAGAGGCATACA
GAGATCTTGGCTCCAGAGGAAACAGGCAAAAAACAAGAATGATGTGGTTA
ATTGATGAACTCGGCATTGAAGGATTCAGGGCGGAGGTAGTGAGGAGAAT
GCCTGGACAGGAGCTTGATAGAGCATCCTCGGAAGACTTGGTTCAGAGGC
AATGGGACAGGAGAGACTATCTTGGTGTGCATCCACAAAAACAGGAAGGA
TTTAACTATGTAGGTCTTCATATTCCCGTTGGTCGAGTCCAAGCAGGTGA
TATGGACGAGCTAGCTCGTCTGGCTGACGCG
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