EY693219

Overview
NameEY693219
Unique NameEY693219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693219 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.531e-41
Identity = 87/145 (60.00%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  299 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIXXXXXXXXXXXXXXXWIIYGATKGAMNHLARILACEWAQD 733
            HTC+RNE +L+EC+  W+ KGF+VTGSVCD S R EREKL+  VSS+F GKL+ILINN+G    K T++YTAEDFSF ++TN ESAY+L QLAHPLLKASG  +I                 IY ATKGA+N LAR LACEWA D
Sbjct:   42 HTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVG-SIYSATKGALNQLARNLACEWASD 185          
BLAST of EY693219 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.693e-40
Identity = 82/145 (56.55%), Postives = 103/145 (71.03%), Query Frame = 2
Query:  299 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIXXXXXXXXXXXXXXXWIIYGATKGAMNHLARILACEWAQD 733
            +TCSR++ DL EC+  W+ KGFKV+G VCDVSS  +R+ L+  V+S F+GKLNILINN GTTI K    +TAED+S +M TNFE++YNLCQLAHPLLKASG ASI                 IY A+KGA+N + + LACEWA+D
Sbjct:   45 YTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLS-SIYAASKGAINQVTKSLACEWAKD 188          
BLAST of EY693219 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.256e-35
Identity = 73/145 (50.34%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  299 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIXXXXXXXXXXXXXXXWIIYGATKGAMNHLARILACEWAQD 733
            +TCSRN+ +L++C+  W++KGFKV  SVCD+SSR ER++L+N V++ F GKLNIL+NN G  I K   +YT ED+S +M+ NFE+AY+L  LAHP LKAS   ++                 +YGATKGAM+ L R LA EWA+D
Sbjct:   37 YTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYE-AVYGATKGAMDQLTRCLAFEWAKD 180          
BLAST of EY693219 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.388e-34
Identity = 73/145 (50.34%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  299 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIXXXXXXXXXXXXXXXWIIYGATKGAMNHLARILACEWAQD 733
            +TCSRN+ +L EC+  W++KGF V  SVCD+SSR ERE+ +  VS+ F GKLNIL+NN G  I K   +YT ED+S +M+ NFE+AY+L  LAHP LKAS   ++                 +YGATKGAM+ L R LA EWA+D
Sbjct:   37 YTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYE-AVYGATKGAMDQLTRCLAFEWAKD 180          
BLAST of EY693219 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.813e-34
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  299 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIXXXXXXXXXXXXXXXWIIYGATKGAMNHLARILACEWAQD 733
            +TCSRNE +L EC+  W+ KG  V GSVCD+ SR ER+KL+  V+ +FDGKLNIL+NN G  I K   ++T +D++ +M TNFE+AY+L Q+A+PLLKAS   ++                 +Y A+KGA+N + + LACEWA+D
Sbjct:   49 YTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSV-SLYSASKGAINQMTKSLACEWAKD 192          
The following BLAST results are available for this feature:
BLAST of EY693219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRNH1_ARATH1.531e-4160.00Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRNH_DATST1.693e-4056.55Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN2_DATST1.256e-3550.34Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI1.388e-3450.34Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
TRN1_DATST1.813e-3447.59Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-C03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693219 ID=EY693219; Name=EY693219; organism=Citrus sinensis; type=EST; length=960bp
CCACGCGTCCGGTGTGAAGTTCACTTTAACTTTTATCACCTTTATTTCGA
ATGGCGCCTCCGACGAACGGCAATGGCAGGCTCAATCAGAGATGGACTGT
CCAGGGAATGACTGCGCTTGTAACTGGTGGAACCAAAGGACTAGGGTTCT
TAATCGATTCTTATCTCTCTAGCTAGCTCTTATATGCATTCCTTTCCTAT
TAATAGTGCCTGCATGTGCTCATATTTTTGTTTCTGTTATTGGTGCATTG
ACTAGTCATGCTGTAGTGGAGGAACTGGCTGAGCTTGGTGCCGCTGTGCA
TACATGCTCTAGGAATGAAGCAGATCTTAGTGAATGCATACGTGACTGGA
AAACTAAAGGCTTCAAAGTCACCGGTTCAGTGTGCGATGTATCATCTCGA
ATTGAACGGGAAAAGCTTATAAACCAAGTCTCCTCTCTGTTCGATGGAAA
ACTTAACATTCTCATAAACAACGTCGGGACGACTATAAGAAAGGCGACTG
TGGAGTACACAGCAGAAGATTTCTCGTTTCTCATGGCTACCAATTTTGAG
TCTGCTTACAATCTGTGCCAACTTGCACATCCTCTTTTGAAAGCTTCGGG
GGCAGCAAGTATTGTTCTAATGTCTTCTNGTTGTGGGGTGGTGTCAGTTG
TTGACGTTTGGATCATATATGGAGCTACGAAAGGAGCCATGAACCATCTT
GCGAGGATTTTGGCATGCGAGTGGGCTCAAGATATATTANGACCATTCTG
TCTCACCTTGGTCGCGCGACTCCTTTACTGAATCTTTCTGATGATGAGCA
TTTTTAAAGGAGTCGAGGGTCGACTCCATGAGACCACAGGNAACCAATGA
GAATCTTCATGGGACATTTTATGCATGCTGCGCCTCTATATACTGGTCAA
ACATTCGCTGACGAGGTTTAAGGGATGGATCTTCTTCCAGACTGATTATT
TGCCCCTCCC
back to top