EY693200

Overview
NameEY693200
Unique NameEY693200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY693200 vs. ExPASy Swiss-Prot
Match: XYLF_ECOLI (D-xylose-binding periplasmic protein OS=Escherichia coli (strain K12) GN=xylF PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.666e-18
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = -2 
Query:    3 LKTVLITSVLALLSNSVMADAAHPKIGFSIDDLRLERWARDRDYFTAAAEQLGTKVYVQSADANEQRQISQIENLISR 236
            +K +L+T   +LL  +V A A   KIG +IDDLRLERW +DRD F   AE LG KV+VQSA+ NE+ Q+SQIEN+I+R
Sbjct:    3 IKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR 80
[Close]
BLAST of EY693200 vs. ExPASy Swiss-Prot
Match: XYLF_HAEIN (D-xylose-binding periplasmic protein OS=Haemophilus influenzae GN=xylF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = -2 
Query:    3 LKTVLITSVLALLSNSVMADAAHPKIGFSIDDLRLERWARDRDYFTAAAEQLGTKVYVQSADANEQRQISQIENLISR 236
            +K+ L+T V AL   S  A +   KIG SIDDLRLERW +DRD F   AE +G KV+VQSA+ ++  QISQIEN+I++
Sbjct:    3 IKSALLTLVGALTVFSSSAHSKDLKIGLSIDDLRLERWQKDRDIFVNKAESMGAKVFVQSANGDDSAQISQIENMINK 80
The following BLAST results are available for this feature:
BLAST of EY693200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XYLF_ECOLI3.666e-1856.41D-xylose-binding periplasmic protein OS=Escherichi... [more]
XYLF_HAEIN1.703e-1553.85D-xylose-binding periplasmic protein OS=Haemophilu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-A07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693200 ID=EY693200; Name=EY693200; organism=Citrus sinensis; type=EST; length=345bp
CCTCGGGAGATCAGGTTTTCTATCTGCGAGATCTGCCGCTGTTCGTTGGC
GTCCGCCGATTGCACATAGACTTTGGTGCCCAACTGCTCGGCGGCGGCGG
TGAAGTAATCGCGGTCCCGCGCCCAGCGCTCAAGGCGAAGGTCATCGATG
GAAAAGCCGATTTTCGGATGGGCCGCGTCGGCCATGACCGAATTGGAAAG
CAGTGCCAGAACGCTGGTGATCAAGACGGTTTTCAGGTGTTTCATGATGG
TGAGTCCCTTTTATTGTTGTTTAGACGCACTTCTGGACCTGGAGCGTAGC
GGTCATGGGTAGATAAAGCGATTCACCACGCCTTCTAGCATCTCC
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