EY693198

Overview
NameEY693198
Unique NameEY693198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693198 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  326 PAMRFGGQILYSRTSTEVEMSAIELRRILEANKSEAGQAVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIH-SGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELXK 787
            P M+F G I+YS  S +  + + ++R  L        + V+GFDIEW P + KG    K A++Q+C     CY+  I   +G P  L+ LLED ++ KVGVGI  D  K+  DY + +K   +LS +A  K+    +KW    L + L  ++L K
Sbjct:   39 PFMKFNGSIVYSYESNDCSLLSEDIRSSL------LEEDVLGFDIEWPPVYTKGKTG-KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKL-RCKEKWTFNGLIKHLFKEQLYK 185          
BLAST of EY693198 vs. ExPASy Swiss-Prot
Match: WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.450e-16
Identity = 53/166 (31.93%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  326 PAMRFGGQILYSRTSTEVEMSAIELRRILEANKSEAGQAVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELXKPIE---SDWEN 811
            P + F G I+YS  +++    + ++   L          VVGFD+EW P ++ G   R  AV+Q+C   N CY+  I    + P  L++LLE+ +I K GVGI  D  K+ RD++V +++  +L+ +A  K+   ++ W L  L + ++ K+L K      S+W N
Sbjct:   39 PFLEFPGSIVYSYEASDCSFLSEDISMRLSDGD------VVGFDMEWPPIYKPGKRSR-VAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKL-KCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSN 196          
BLAST of EY693198 vs. ExPASy Swiss-Prot
Match: WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 49/155 (31.61%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  326 PAMRFGGQILYSRTSTEVEMSAIELRRILEANKSEAGQAVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELXK 787
            P + F G I+YS  +++    + ++   L          VVGFD+EW P + +G L  K A++Q+C   + CY+  +    + P  L++LLE+  + K GVGI  D  K+ RD+++ +K   +L+ +A  K+   ++ W L SL + L+ K+L K
Sbjct:   45 PFLEFTGSIVYSYDASDCSFLSEDISMSLSDGD------VVGFDMEWPPLYNRGKLG-KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVELTDVANKKL-KCTETWSLNSLVKHLLGKQLLK 191          
The following BLAST results are available for this feature:
BLAST of EY693198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRN_XENLA2.249e-1735.48Werner syndrome ATP-dependent helicase homolog OS=... [more]
WRN_MOUSE9.450e-1631.93Werner syndrome ATP-dependent helicase homolog OS=... [more]
WRN_HUMAN1.612e-1531.61Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-A05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693198 ID=EY693198; Name=EY693198; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGATCCAAATTTTGTCTTTGAAATTTCGCACTCCCTCCAAT
TTATACCCAAAATGGAAAAGAAGTCGGTAGTAACACAAGGGGACGACGAT
GAGCCCATCACGGAACAGGAACTCGAAATCGTTGAAGCAATAGAAGCCGC
ATATGAACTGTCAATCACAAGGAAAAGACAATTAAGTCCTCCTGTTCATA
ACAATCATACCCATCGCCCCATGTCCATAACTTCCCGCCGGTTGCCCTCT
TCACTTGTTGCTTCGCCTTCTTCACCTTCGTTTTCTCTATCACATTGCCA
AGGAGCTAACATGAGGTTGAAATACCCTGCAATGAGGTTTGGAGGTCAAA
TTTTGTATAGCAGAACTTCAACAGAGGTAGAGATGTCCGCAATAGAGCTT
CGACGGATTCTTGAAGCTAATAAAAGTGAAGCAGGTCAGGCCGTTGTTGG
ATTTGACATTGAGTGGAAGCCCACTTTCAGAAAAGGTGTTTTACCAAGAA
AAGCTGCAGTTATGCAGATATGCGGAGACAGCAACCATTGTTATGTCATG
CAAATTATTCATTCAGGAATCCCTCCGAGCCTGCAACTGCTACTTGAAGA
TTCTACAATTTTAAAAGTTGGAGTTGGGATAGGCAGTGATGCTGGTAAAG
TTTACAGAGACTATAATGTATCTGTCAAAGCTTCTGAGGATCTTTCCTAT
CTAGCAAAACATAAGATTGGCGGAGATAGTCAAAAATGGGGTCTTGCATC
ACTGACCGAGATGCTTGTTTGCAAGGAGCTTNAGAAGCCCATAGAATCAG
ACTGGGAAAATGGGAGCAGATGTTTATCAAAGGACAGCTACTGTATGCCG
CACAGATGCTTTTGCTT
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