EY693191

Overview
NameEY693191
Unique NameEY693191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 2.131e-90
Identity = 165/225 (73.33%), Postives = 185/225 (82.22%), Query Frame = 3
Query:  129 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIXGLVIGYIEFQRTQSLTPRKTL-PREKSF*SSGLGR*PGKKXTLQ 797
            +GTR+ P I+  SGR  A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWI  LVIGYIEFQR   L   K L P  K F   GL   P K   LQ
Sbjct:   15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQ 239          
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.403e-88
Identity = 166/225 (73.78%), Postives = 184/225 (81.78%), Query Frame = 3
Query:  129 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIXGLVIGYIEFQRTQSLTPRKTL-PREKSF*SSGLGR*PGKKXTLQ 797
            +GTR+  DI SNS R  ARFGFG +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWI  LVIGYIEFQR   L   K L P  K F   GL   P KK  LQ
Sbjct:   14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQ 236          
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 3.644e-82
Identity = 153/226 (67.70%), Postives = 173/226 (76.55%), Query Frame = 3
Query:  132 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIXGLVIGYIEFQRTQSLTPRKTLPREKSF*SSGLGR*PGKKXTLQ 797
            G R+ D    +GR+QARFGF  GK+K AP  KKS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWI  LV+GYIEFQR   L P K +     F   GL   P K  TL+
Sbjct:   14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLK 239          
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 2.520e-43
Identity = 95/183 (51.91%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  198 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIXGLVIGYIEFQRTQSLTPRK 725
            +K A     +S G   R      LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWI  +++G  EF R     P K
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEK 210          

HSP 2 Score: 21.557 bits (44), Expect = 2.520e-43
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 2
Query:  698 KNSELDPEKDSTPGEKF 748
            +NSE +PEK   PG  F
Sbjct:  202 RNSETNPEKRCYPGGVF 218          
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.404e-17
Identity = 57/183 (31.15%), Postives = 80/183 (43.72%), Query Frame = 3
Query:  171 IQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIXGLVIGYIEFQR 701
            + ++ G G   T+ K    ++ ++ +  W P  K       PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+    L++G++E +R
Sbjct:   32 VNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKR 163          

HSP 2 Score: 23.8682 bits (50), Expect = 4.404e-17
Identity = 13/34 (38.24%), Postives = 16/34 (47.06%), Query Frame = 1
Query:  721 ERLYPGRKVFDPLGWAADPERXAPSNGRDQHARL 822
            E+ YPG K FDPL  A        +   D+  RL
Sbjct:  194 EQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERL 227          
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.085e-14
Identity = 57/180 (31.67%), Postives = 74/180 (41.11%), Query Frame = 3
Query:  180 RFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIXGLVIGYIEFQR 701
            RF       APKKS           W P  K+      PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  +L+    L++G++E +R
Sbjct:   41 RFVVAAAAVAPKKS-----------WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 158          

HSP 2 Score: 23.483 bits (49), Expect = 1.085e-14
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  721 ERLYPGRKVFDPLGWA 768
            E+ YPG K FDPL  A
Sbjct:  189 EQGYPGGKFFDPLALA 204          
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.017e-14
Identity = 50/155 (32.26%), Postives = 66/155 (42.58%), Query Frame = 3
Query:  255 WYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIXGLVIGYIEFQR 701
            W P  +       PEWLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+    +++G++E +R
Sbjct:   55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKR 158          

HSP 2 Score: 23.483 bits (49), Expect = 4.017e-14
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  721 ERLYPGRKVFDPLGWA 768
            E+ YPG K FDPL  A
Sbjct:  189 EQGYPGGKFFDPLALA 204          
BLAST of EY693191 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 55/179 (30.73%), Postives = 77/179 (43.02%), Query Frame = 3
Query:  255 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIXGLVIGYIEFQRTQSLTPRKTLPREKSF*SSGLGR*PGK 782
            W PG   P +LDGS  GD+GFD  GLG+                   PA                          L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ I  L I ++E QR+      K      +F   G  + P K
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAK 184          
The following BLAST results are available for this feature:
BLAST of EY693191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CB4A_ARATH2.131e-9073.33Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.403e-8873.78Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH3.644e-8267.70Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE2.520e-4351.91Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4_SPIOL4.404e-1731.15Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC1.085e-1431.67Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC4.017e-1432.26Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB11_SOLLC2.331e-1230.73Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-H09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693191 ID=EY693191; Name=EY693191; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGCCAGGAGTATCGATCACTTAACAAGTTACAATTTCAATC
AACACTACACACCCCACCGTAAGTTAGCCACAAGCCATGGCCTCAACCAC
AGCAGCAGCAGCCGCCACATCATCTTTCATTGGCACCCGCCTCCCCGACA
TTTACTCAAACTCGGGCCGTATCCAAGCCCGGTTCGGCTTCGGAAAGAGA
AAAACAGCACCCAAAAAGTCGAAACAGTCTTCCGGATCCTCTGATCGTCC
ACTTTGGTACCCAGGAGCCAAGGCACCCGAGTGGCTCGACGGGAGCTTGG
TGGGTGACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCGGAGTAC
TTGCAGTATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGC
TGGCGATATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGC
CGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGT
GAGCTCATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCAC
TGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGT
TAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAACA
ACGTTGATATGGATTGNAGGTTTGGTAATTGGCTACATTGAGTTCCAAAG
AACTCAGAGCTTGACCCCGAGAAAGACTCTACCCCGGGAGAAAAGTTTTT
GATCCTCTGGGCTGGGCCGCTGACCCGGAAAGAAANGCACCCTCCAATGG
CAGAGATCAGCACGCCCGCCTGCATGGNTGCATTCCNTGCTCGCTGNCNA
GCTGNTGTCACCGGAAAGGCTCTCAACACTGGGTACCACTTGAGGATCTC
TCAC
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