EY693186

Overview
NameEY693186
Unique NameEY693186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693186 vs. ExPASy Swiss-Prot
Match: MEPCE_MOUSE (7SK snRNA methylphosphate capping enzyme OS=Mus musculus GN=Mepce PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.116e-24
Identity = 46/154 (29.87%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  123 EDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI--------ARTEHNEKRRANASRVEVIKKGDGLEKNVTAAQE*KKAISRNCSPAERNLF-DIVSFKQENFVHGR----DSPEKYYDAILCLSV 545
            ED R +VLK EWF+G+D LD+GCN G +T+ IA K+    ++G+DID   +  A  ++R          A+T   +           ++K      ++TA++    A       A+ ++F + V F   N+V  R    D+    YD +LC S+
Sbjct:  407 EDVRLRVLKPEWFQGRDVLDLGCNVGHLTLSIACKWGPARMVGLDIDPRLIHSARQNIRHYLSEELRLQAQTSEGDPGTEGEEGTITVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVDAQRPEYDVVLCFSL 560          

HSP 2 Score: 65.0846 bits (157), Expect = 6.116e-24
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 2
Query:  536 FERTKWIHLNWGDDALITLFMRIWKLLRAAGIFVLEPSP*VSYEKNRRVSETTATNF 706
            F  TKW+HLNWGD+ L  +F RI++ LR  GI VLEP P  SY K + ++ET   N+
Sbjct:  558 FSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCKRKSLTETIYKNY 614          
BLAST of EY693186 vs. ExPASy Swiss-Prot
Match: MEPCE_HUMAN (7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.891e-11
Identity = 49/156 (31.41%), Postives = 77/156 (49.36%), Query Frame = 3
Query:  123 EDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI--------ARTEHNEKRRANASRVEVIKKGDGLEKNVTAAQE*KKAISRNCSPAERNLF-DIVSFKQENFVHGRD------SPEKYYDAILCLSV 545
            ED R +VLK EWF G+D LD+GCN G +T+ IA K+    ++G+DIDS  +  A  ++R           +T   +           ++K      ++TA++    A       A+ ++F + V F   N+V  RD      +PE  YD +LCLS+
Sbjct:  430 EDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPE--YDVVLCLSL 583          

HSP 2 Score: 20.4014 bits (41), Expect = 5.891e-11
Identity = 7/18 (38.89%), Postives = 11/18 (61.11%), Query Frame = 2
Query:   56 RKGKDVFPFGNYKNYYDW 109
            +K +  F +GNY  YY +
Sbjct:  407 KKQQRKFQYGNYCKYYGY 424          
The following BLAST results are available for this feature:
BLAST of EY693186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MEPCE_MOUSE6.116e-2429.877SK snRNA methylphosphate capping enzyme OS=Mus mu... [more]
MEPCE_HUMAN5.891e-1131.417SK snRNA methylphosphate capping enzyme OS=Homo s... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-H03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693186 ID=EY693186; Name=EY693186; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGAAGTTGAAGAAGAAGAAAAGGGCGAAGCTCAACTACTTA
AGAAAAGAAAGGGCAAAGACGTTTTTCCCTTCGGCAATTACAAAAACTAC
TACGATTGGTCAGGGCTTGAACGAAGATCCTCGATTTAAAGTGTTGAAAA
AGGAATGGTTTGAAGGCAAAGATTGTCTCGACATTGGCTGCAATAGTGGC
ATCATTACCATTCAAATTGCACAAAAGTTTAACTGCCGGAGTATCCTTGG
GATTGACATCGACTCTAATCGTGTTGCGGATGCATATTGGCACCTTAGGA
AAATTGCAAGAACGGAACATAATGAGAAAAGACGAGCGAATGCTTCTAGA
GTGGAGGTTATAAAGAAAGGAGATGGTTTAGAGAAGAACGTAACTGCTGC
ACAAGAATAGAAGAAGGCAATTTCAAGGAATTGTTCTCCTGCAGAAAGAA
ATCTCTTTGACATAGTTTCTTTCAAACAGGAAAATTTTGTACATGGTCGG
GACTCACCGGAGAAGTACTATGATGCGATTCTCTGTTTGAGCGTACAAAA
TGGATACATTTGAATTGGGGTGATGATGCGTTGATTACTTTATTTATGAG
GATATGGAAACTTCTTCGTGCGGCTGGCATTTTTGTGTTGGAACCCTCAC
CTTGAGTATCGTATGAAAAGAATCGTCGGGTGTCTGAGACGACCGCAACA
AATTTCCAAATATCTAGTTGTATCCAAAAGAGTTCCAGGAAAATTCTCTA
GATAGATTGGATTTAAAACTGGAGAAGACATCCGNTCTGGGGGTTTATCC
CCCAGAAAACTGAATTCAACAACGGAATTTTTATCCGCAATTGCTCTTAC
CAAAAAACTGCTGGTTCCGCTGGTTCTTGGAAAGGAAGCTATTTCTTCCT
TTTTAAGGGGCAAGTG
back to top