EY693180 | Citrus Genome Database

Overview


Name	EY693180
Unique Name	EY693180
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	891

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPOG_MOUSE (Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.670e-45
Identity = 77/124 (62.10%), Postives = 89/124 (71.77%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCG 383
            R TLR +K WAKRRGIYSN  GFLGGV+WA+LVAR CQLYPNA  S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS  T  VM E+F+ G
Sbjct:  220 RLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQG 343

HSP 2 Score: 39.2762 bits (90), Expect = 4.670e-45
Identity = 21/53 (39.62%), Postives = 26/53 (49.06%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI  GK+DWS L E   FF  Y +Y+ +          L W G VES+
Sbjct:  344 LAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESK 396

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPOG_HUMAN (Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.670e-45
Identity = 77/124 (62.10%), Postives = 89/124 (71.77%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCG 383
            R TLR +K WAKRRGIYSN  GFLGGV+WA+LVAR CQLYPNA  S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS  T  VM E+F+ G
Sbjct:  220 RLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQG 343

HSP 2 Score: 39.2762 bits (90), Expect = 4.670e-45
Identity = 21/53 (39.62%), Postives = 26/53 (49.06%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI  GK+DWS L E   FF  Y +Y+ +          L W G VES+
Sbjct:  344 LAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESK 396

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPO1_XENLA (Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-A PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.671e-45
Identity = 77/129 (59.69%), Postives = 91/129 (70.54%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            R TLR +K WAKR  IYSN  GFLGGV+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G  I +
Sbjct:  203 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITD 331

HSP 2 Score: 41.5874 bits (96), Expect = 4.671e-45
Identity = 22/53 (41.51%), Postives = 29/53 (54.72%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI LGKA+WS LF+   FF  Y++Y+ +          L W G VES+
Sbjct:  327 LAITDEILLGKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGLVESK 379

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPOA_HUMAN (Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4)

HSP 1 Score: 162.54 bits (410), Expect = 6.085e-45
Identity = 77/129 (59.69%), Postives = 91/129 (70.54%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            R TLR +K WAKR  IYSN  GFLGGV+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G  I +
Sbjct:  221 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITD 349

HSP 2 Score: 40.4318 bits (93), Expect = 6.085e-45
Identity = 22/53 (41.51%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI L KA+WS LFE   FF  Y++Y+ +          L W G VES+
Sbjct:  345 LAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESK 397

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPOA_MOUSE (Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4)

HSP 1 Score: 162.54 bits (410), Expect = 6.085e-45
Identity = 77/129 (59.69%), Postives = 91/129 (70.54%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            R TLR +K WAKR  IYSN  GFLGGV+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G  I +
Sbjct:  221 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITD 349

HSP 2 Score: 40.4318 bits (93), Expect = 6.085e-45
Identity = 22/53 (41.51%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI L KA+WS LFE   FF  Y++Y+ +          L W G VES+
Sbjct:  345 LAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESK 397

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPOA_BOVIN (Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 6.085e-45
Identity = 77/129 (59.69%), Postives = 91/129 (70.54%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            R TLR +K WAKR  IYSN  GFLGGV+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G  I +
Sbjct:  221 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITD 349

HSP 2 Score: 40.4318 bits (93), Expect = 6.085e-45
Identity = 22/53 (41.51%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI L KA+WS LFE   FF  Y++Y+ +          L W G VES+
Sbjct:  345 LAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESK 397

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAP_DICDI (Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.032e-44
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPI-EMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRI 392
            R  LRC+K WA RRGIYSN  GFLGGV+WALL AR+CQLYPN+ PS ++ RFF+VY  W+WP P+++C I E G LG  VW+P+   +D++H MPIITPAY  MNS+Y VS  TLQ+M  +F  G  I
Sbjct:  255 RMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK---RDKAHLMPIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEI 379

HSP 2 Score: 43.5134 bits (101), Expect = 1.032e-44
Identity = 21/59 (35.59%), Postives = 30/59 (50.85%), Query Frame = 1

Query:  481 TQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVES--RFIQLTLE 651
            T++IE G+  W  L E   FF  Y  Y+++D           W+GW+ES  RF+   LE
Sbjct:  380 TRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLE 438

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPOB_MOUSE (Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 5.068e-44
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCG 383
            R TLR +K WAK   IYSN  GFLGGV+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G
Sbjct:  221 RLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQG 344

HSP 2 Score: 40.4318 bits (93), Expect = 5.068e-44
Identity = 22/53 (41.51%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI L KA+WS LFE   FF  Y++Y+ +          L W G VES+
Sbjct:  345 LAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGLVESK 397

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPOB_HUMAN (Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.069e-44
Identity = 74/124 (59.68%), Postives = 88/124 (70.97%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCG 383
            R TLR +K WAK   IYSN  GFLGGV+WA+LVAR CQLYPNA+ S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G
Sbjct:  221 RLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQG 344

HSP 2 Score: 40.4318 bits (93), Expect = 5.069e-44
Identity = 22/53 (41.51%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYENYLQVDIVXXXXXXLLTWKGWVESR 630
            L  T EI L KA+WS LFE   FF  Y++Y+ +          L W G VES+
Sbjct:  345 LAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESK 397

[Close]

BLAST of EY693180 vs. ExPASy Swiss-Prot
Match: PAPO3_XENLA (Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.813e-41
Identity = 77/129 (59.69%), Postives = 91/129 (70.54%), Query Frame = 3

Query:   12 RTTLRCLKFWAKRRGIYSNANGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICE 398
            R TLR +K WAKR  IYSN  GFLGGV+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y VS+ T  VM E+F+ G  I +
Sbjct:  218 RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITD 346

HSP 2 Score: 28.1054 bits (61), Expect = 3.813e-41
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 1

Query:  472 LCPTQEIELGKADWSALFEHYPFFDAYE 555
            L  T EI L KA+WS LF+   FF  Y+
Sbjct:  342 LAITDEILLLKAEWSKLFDAPNFFQKYK 369

The following BLAST results are available for this feature:

BLAST of EY693180 vs. ExPASy Swiss-Prot

BLAST of EY693180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15


Match Name	E-value	Identity	Description
PAPOG_MOUSE	4.670e-45	62.10	Poly(A) polymerase gamma OS=Mus musculus GN=Papolg...	[more]
PAPOG_HUMAN	4.670e-45	62.10	Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG...	[more]
PAPO1_XENLA	4.671e-45	59.69	Poly(A) polymerase alpha-A (Fragment) OS=Xenopus l...	[more]
PAPOA_HUMAN	6.085e-45	59.69	Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA...	[more]
PAPOA_MOUSE	6.085e-45	59.69	Poly(A) polymerase alpha OS=Mus musculus GN=Papola...	[more]
PAPOA_BOVIN	6.085e-45	59.69	Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA P...	[more]
PAP_DICDI	1.032e-44	58.59	Poly(A) polymerase OS=Dictyostelium discoideum GN=...	[more]
PAPOB_MOUSE	5.068e-44	60.48	Poly(A) polymerase beta OS=Mus musculus GN=Papolb ...	[more]
PAPOB_HUMAN	5.069e-44	59.68	Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB ...	[more]
PAPO3_XENLA	3.813e-41	59.69	Poly(A) polymerase type 3 (Fragment) OS=Xenopus la...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-700-008-G08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY693180 ID=EY693180; Name=EY693180; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCGCACGACGCTCAGATGTCTGAAGTTCTGGGCTAAAAGG
CGCGGCATTTATTCAAACGCTAATGGATTCCTTGGTGGTGTAAATTGGGC
TCTTCTGGTTGCACGCGTGTGCCAACTTTATCCCAATGCAATTCCCAGTA
TGCTAGTTTCTCGGTTTTTTAGAGTGTATACACAGTGGCGTTGGCCAAAC
CCTGTCATGATGTGTCCAATAGAAATGGGTGAACTGGGGTTCTCAGTGTG
GGATCCTCGTAAAAACCCCAAGGACCGATCTCATCGTATGCCTATAATAA
CTCCAGCATATCATTGTATGAACTCTAGTTATAAGGTCTCTTTAGGTACT
CTTCAAGTTATGACAGAGCAGTTCCAGTGCGGTAACAGGATCTGTGAGGT
GAGAGCATACTTTGTAAGTTTTACCTCCATAGCTGCATAGGTTTGGGTAT
TGATGCTTCATCCTTAGCGATTTATGCCCAACGCAAGAAATTGAGCTGGG
CAAGGCGGACTGGAGTGCTCTGTTTGAGCATTATCCTTTCTTTGACGCAT
ATGAGAACTATCTGCAGGTTGATATTGTTGCAGCAGATGCTGATGATTTA
CTAACTTGGAAAGGGTGGGTGGAATCTCGGTTTATACAACTTACCCTAGA
AGTAAAAGACATTTCTTCGAAGTATTTTGTCAAAATGGGTTATACCACTG
CATTACAGCCATGGGTCCGAAGATTAATGATAGCTAGTCAAACTTTTCCC
TTCTTTTTGGGTTGGGCAAATTTCCTGGGCCTTTATTTAAATAAACAAGA
ACCAATGGGGTGCTGCAATGCCTTCTTATCCGATAATAAATTGACCCTCC
AACCTTGCCCATTTTGGCTTTTTTTGGGTTTGGGAAAAAAA