EY693176

Overview
NameEY693176
Unique NameEY693176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693176 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.571e-27
Identity = 72/150 (48.00%), Postives = 95/150 (63.33%), Query Frame = 2
Query:  134 NEVFNNTIMATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVPEIMLIAASSATVTNTSDMKTDNTNCSASSPVLTRSPSLQSTASALASPRTQSYPVQRNLLCKLQAELPMARRHSLQRFFENRRDKLVNNNPYPVLSDAKTSD 583
            NEV  +T + TA PT       + P QLTIF+GG V VFD +P++KV EI+ IAA +    N++ +         SSP L R+PS  ST++ +ASP  Q +P+Q    C+  A+LP+ARRHSLQRF E RRD+LVN NPYP  SD K +D
Sbjct:   39 NEV-RSTEIQTAEPT-------VPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSISP------VSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
BLAST of EY693176 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.794e-14
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  200 LAPTQLTIFYGGKVCVFDAIPADKVPEIMLIAASSATVTNTSDMKTDNTNCSASSPVLTRSPSLQSTASALASPRTQSYPVQRNLLCKLQAELPMARRHSLQRFFENRRDKLVNNNPY-PVLSDAKTSDT 586
            + P+QLTI +GG   VFD IPA+KV EI+ IAA++          T+  N ++ +P L R+ S  S AS +A              C   A++P+ARR SLQRFFE RR + V+  PY    S+A  ++T
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKA--------TETINLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNET 233          
BLAST of EY693176 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  215 LTIFYGGKVCVFDAIPADKVPEIMLIAASSATVTNTSDMKTDNTNCSASSPVLTRSPSLQSTASALASPRTQSY--PVQRNLLCKLQAELPMARRHSLQRFFENRRDKLVNNNPYPVLSDAKTS 580
            LTIFYGG+V VFD   A+K  E++ +A   +  + T      N N SA S        + S+ + + SP   +   P+Q N    L  ELP+ARR SL RF E R+D++ +  PY +   A+ S
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS 237          
The following BLAST results are available for this feature:
BLAST of EY693176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TIF3B_ARATH1.571e-2748.00Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH5.794e-1439.23Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH5.996e-1136.29Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-G04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693176 ID=EY693176; Name=EY693176; organism=Citrus sinensis; type=EST; length=931bp
CCACGCGTCCGATTTGGGACTGTTGATGAAGTGAAGCCGAAGGCTGAGGC
CGGAATGGAAGTATACGATAAGAAGAAGCATGAGGTTGCGCAAAACGACG
CCGGATCTGCTGCAGGGTCTTGATTTTTCTGGGAACGAGGTGTTTAACAA
CACCATTATGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGACC
TTGCTCCAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATTT
GATGCAATTCCAGCAGACAAGGTTCCTGAAATTATGCTTATTGCTGCCTC
TTCTGCCACTGTTACTAACACAAGTGACATGAAGACGGACAATACCAACT
GTTCTGCCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCACT
GCAAGTGCTTTGGCATCACCTCGGACACAATCATATCCTGTGCAGAGGAA
TCTCCTCTGTAAATTGCAAGCTGAACTACCGATGGCGAGGAGGCATTCCC
TTCAGCGATTTTTCGAGAATCGACGTGACAAGCTGGTGAACAATAATCCA
TATCCTGTTCTATCAGATGCAAAAACTTCTGACACCAAGCTCAGACTCCT
GCAGAGGCATGTTGCTTTGATATAACTTCCGTGCGTCACGTAGAATTGCA
ACCTAATGCTGCAGACGATGTAGCACAATTATCTATCTTGCTTAGATGTT
TGTAGTAAATAATCAGAACTATCTACTTAGATAACTAGACATTGCTGTAC
TGTTGTGTGAAAACCGNANCGCAAGGGCGAGATGATGTTTGAATGGCTTT
GAAATGNACGAATGCGTGTGACACTTCTCTTGTCCGGACCAGAAAAAAAA
ATTCCTGAAGAGTGCTTCCCCTGGGATGCACTTTATTGCAATGAAATTTT
CACAAAACCTAAAAATTATGGCTGCTTCCAC
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