EY693175

Overview
NameEY693175
Unique NameEY693175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY693175 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.207e-16
Identity = 48/84 (57.14%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:  459 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRKLRVEWTKHERGITRPVGGSSARRPXXNTDLQDXGCR*FD-HIIRAQGLRKHFE 707
            GFAF+YM+DERDAEDAIR LDR EFGRKGR+LRVEWTK ERG  +  GG S R        +      FD    R + L KHFE
Sbjct:   36 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFE 119

HSP 2 Score: 68.5514 bits (166), Expect = 5.834e-11
Identity = 28/36 (77.78%), Postives = 35/36 (97.22%), Query Frame = 2 
Query:   38 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFSW 145
            +FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GF++
Sbjct:    4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAF 39
[Close]
BLAST of EY693175 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3 
Query:  459 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRKLRVEWTKHERGITRPVGG----SSARRP-----XXNTDLQDXGCR*FDHIIRAQGLRKHFE 707
            GFAF+YM+DERDAEDAIR LDR E+GR GR+LRVEWTK++RG     GG    SS  RP       N D Q+          R + L +HFE
Sbjct:   36 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQN---------TRTRDLERHFE 118

HSP 2 Score: 70.0922 bits (170), Expect = 2.005e-11
Identity = 29/36 (80.56%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   38 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFSW 145
            +FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GF++
Sbjct:    4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAF 39
The following BLAST results are available for this feature:
BLAST of EY693175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RSP40_ARATH1.207e-1657.14Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
RSP41_ARATH1.476e-1451.09Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-G03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693175 ID=EY693175; Name=EY693175; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGCTATCTTCTGTGGGA
ACTTTGAGTATGATGCTCGTCAGTCTGATCTGGAGCGGCTTTTCAGAAGA
TATGGAAAAGTTGATAGAGTGGATATGAAGTCTGGATTTTCTTGGGATAT
CCATACTCCTGGCTAATGGATGCACACATCAGAATTTCATTAACTGCCTG
TGACGAGCATCCTCTTCTTGTTCTCAAGAAGAGTCACTCTCATCCGGAAA
GGCACAACCATCCCACATTTTTATTGCCTTTTCATTCCTCATGACTTTTG
CCCAGCCTCCAATTTCAGACATGTTTCAAGCTAGAAACATTGCCGACCTC
ACAGCAGAGGCAACAGAATAGATGGGGAAGGCACTCTATCCATTGACCTC
CCATGAGACATCCACTTTTGGAATCTTGTTCCTTGACATCACTTAATACA
TCTCACAAGGATTTGCATTTATCTATATGGATGATGAGAGAGATGCTGAG
GATGCCATTCGAGGGCTCGATCGAACTGAATTCGGTCGTAAGGGACGCAA
ACTTCGTGTTGAATGGACAAAGCATGAACGAGGCATCACAAGGCCTGTGG
GGGGTTCAAGCGCAAGAAGACCTCNNNACAATACAGACCTTCAAGACCNT
GGTTGTCGTTAATTTGATCATATCATACGCGCACAGGGACTTAGAAAGCA
CTTTGAGCATATGGAAAATCATAAGTGTAAGATCAGAAGTAATTTGCCTT
CGTCATATGAGTGCAGAGGATGCACCATATCCTGGATGCTACAACTGAGC
AAGTGACGGTCAAGTATTCAGTGAATTGCGGTCGGGAGACATGACCGGAG
AAGGACCAGCCCGAAGAAATCGGAAGGGCCCAAAAGGGTGGAGGAATCTC
AGCCCTAAAA
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