EY693121

Overview
NameEY693121
Unique NameEY693121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY693121 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.233e-11
Identity = 49/119 (41.18%), Postives = 66/119 (55.46%), Query Frame = 2 
Query:  359 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQVNSSAED---------SLNKCKEPGASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDY 667
            MDWN K +  +   F+QE  P++  +D S     SS++K +FS DLKLG+   ++           SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+Y
Sbjct:    1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREY 116

HSP 2 Score: 20.4014 bits (41), Expect = 5.233e-11
Identity = 6/9 (66.67%), Postives = 8/9 (88.89%), Query Frame = 1 
Query:  667 HXRHKVCEL 693
            H RHKVC++
Sbjct:  117 HKRHKVCDV 125
The following BLAST results are available for this feature:
BLAST of EY693121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPL13_ARATH5.233e-1141.18Squamosa promoter-binding-like protein 13 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-A06-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693121 ID=EY693121; Name=EY693121; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGCAATAAAATAATGAAGTTCAACTTATTAAAAAACTAAGT
AAACTTCATAAGAGAGCACTTCTTCTCTTTCACCAACCATCTTCTTAGCC
TTTCTACATTCAAGTTTATAGGATTTCTTCAAAAAAAAAATATATATTAT
TTTATTTTTATCTTTGAGTCTTGACTTAAGCCACTTTATTGGTTAGTGAT
GGAATCAATGTCAGTGAATAAATGGCTGCAAAGAGAAACCAGTCTCCATA
TGCTGAACCTGTCTTGAAAGAGAAGCATGATTGGCTTTGGCTATGTTTGA
GAAGGTGTGGAGGGAATTAATTAAAGAATAAAGTCCAACTCTTCAATTGT
TGGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACTGAATTT
GAGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAGTAGCAG
GACAAAAGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTT
CGGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATG
GAGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAA
TGGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGGACCTTA
GTAATTGTAGGGATTACATANGCGCCATAAGGTGTGTGAGCTCACTCGAA
GACGCTCAGGTTTTGATTTGGGGCAGAAGCACGGGTCTGTCAGCATGCAG
CAGGNTTATTTGNTGCGTGCAGGCTAATTTATTGGGTTTTCCATAAAAAT
GGGGAGAAATTAGGGGATGGGACTAATCACTATAAAAGCCCAACATAATG
TTTTTGCTGATATTAAGATAAAGCTGATTTTTGGGTTGAAAAAAAAAAAA
AAAAAAGGGG
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