EY693118

Overview
NameEY693118
Unique NameEY693118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693118 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.473e-38
Identity = 99/212 (46.70%), Postives = 124/212 (58.49%), Query Frame = 1
Query:  142 VSVITNTNSEWSETIQNLIT----------FSPKQTVSSIRPLXXXXXXXXXXXXXXXXXXXXXXXXKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQWLYDFSPCFSLGFMAANLAILEATMEQTTGNTXGQHKIHVIDFDIGQGGQYMNLFHALSARLNGKPASLKS 747
            VSVITN+NS+W   IQNL+T          FSP  + SS  P                         +QTV+E ATA++EGK ++A+EIL R+SQ  N + NSE++L++ M +AL+SR+       PV EL+GKEH  STQ LY+ SPCF LGF AANLAIL+A       N  G    HVIDFDIG+GGQY+NL   LS R NGK  S  S
Sbjct:  216 VSVITNSNSDW---IQNLVTPNPNPNPVLSFSPSSSSSSSSP--------------STASTTTSVCSRQTVMEIATAIAEGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI-----ASPVTELYGKEHLISTQLLYELSPCFKLGFEAANLAILDA----ADNNDGGMMIPHVIDFDIGEGGQYVNLLRTLSTRRNGKSQSQNS 401          
BLAST of EY693118 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  313 KQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPH----------ENPPPVAELFGKEHAESTQWLYDFSPCFSLGFMAANLAILEATMEQTTGNTXGQHKIHVIDFDIGQGGQYMNLFHALSARLNGKPASLK 744
            KQ +I  A A+SEGK + A  ++  L Q  + +G+  QR+  +M   L +R+             + PP        E   + Q L++  PCF  GF+AAN AILEA          G+ ++H+IDFDI QG QYM L  ++ A L GK   L+
Sbjct:  223 KQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP------SDERLAAMQVLFEVCPCFKFGFLAANGAILEAIK--------GEEEVHIIDFDINQGNQYMTLIRSI-AELPGKRPRLR 361          
The following BLAST results are available for this feature:
BLAST of EY693118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SCL8_ARATH1.473e-3846.70Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
SCL1_ARATH1.753e-1535.06Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-A03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693118 ID=EY693118; Name=EY693118; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGCCCACGCGTCCGGGTACCGTCTTATAATAACAGGGTTCA
GGTTCAAGGACAGGAATCAGAGAAGAAGATGCTGAATCGTCTGCAGGAAC
TGGAGAAACAGTTGTTAGACGATGAGGAGGAAGGCGATGACGTGTCAGTT
ATAACGAATACAAACAGCGAGTGGTCAGAAACCATACAAAATCTCATAAC
TTTCAGTCCGAAACAGACGGTCTCGTCGATACGTCCGCTCGCCCCATCAC
CTACTACGTCGTCGTCGTCGTGCTCATCGTCATCGGTGGCTTCGCCGGCT
ACGAGCTGTTCGAAACAGACGGTTATCGAAGCAGCAACGGCGGTTTCGGA
GGGAAAATACGACGTCGCCTCCGAGATCTTGACGCGGCTGAGCCAGGCGA
CGAATTCGAAAGGGAATTCGGAACAGAGGTTGATGGAGCACATGTGTTCA
GCGTTGAAGTCGCGCGTGAACCCACACGAGAACCCGCCGCCTGTCGCTGA
GTTGTTCGGCAAAGAACACGCCGAGTCGACTCAGTGGCTTTACGATTTCT
CCCCGTGTTTCAGCCTGGGCTTCATGGCTGCTAATCTCGCCATTCTTGAG
GCTACAATGGAGCAAACAACAGGTAACACANTTGGCCAGCATAAGATTCA
TGTTATTGATTTCGATATCGGCCAGGGCGGACAGTACATGAATCTCTTTC
ACGCGCTCTCCGCGCGTCTAAACGGGAAACCCGCATCGTTAAAGTCCAGC
CGTGTCTGATGGTACTGCCAGTGAAAAAAACTGAAGGCCGTCGTGAAAGC
TGAGCAAGGTGCGGAAACGGTGGATTTGGCTGCCTTCCACGAACAATTTG
TTGGAAATCAAGAATTGAACCCGACTCCTGGGTGGCGCCCGAAGAACCCA
GCTGGGAAT
back to top