EY693116

Overview
NameEY693116
Unique NameEY693116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693116 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.283e-23
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  120 RSADNSSYRDRRIDLGFGGVFTSDN*VRIYSSKIDYDGADSSKKLDHDRLPPFMKIFYVDSASMDAMYHRDTNEYIQHWLIAVVRRGIPKPVRIFRE 410
            R+ D++SYRDRR D GFGG  +  +     SSK D DG +S +KLD D L PF K FYV+S ++ AM   +  EY +   I V  + IPKPV+ FR+
Sbjct:    7 RTGDSTSYRDRRSDSGFGGTSSYGSSGSHTSSKKDNDGNESPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103          

HSP 2 Score: 51.2174 bits (121), Expect = 2.283e-23
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1
Query:  433 MPEMTEADFWATTSMQAHRWPMAMKRHELVGTAATRSGRILAELLAATVHDIAEPL 600
            + E+ +A F   T +Q+  WPMAMK  +L+G A T SG+ L+ LL A VH  A+P+
Sbjct:  111 LEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166          
BLAST of EY693116 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 5.637e-17
Identity = 38/97 (39.18%), Postives = 50/97 (51.55%), Query Frame = 3
Query:  120 RSADNSSYRDRRIDLGFGGVFTSDN*VRIYSSKIDYDGADSSKKLDHDRLPPFMKIFYVDSASMDAMYHRDTNEYIQHWLIAVVRRGIPKPVRIFRE 410
            R+AD  SYRDRR +  FGG        R ++     D A ++  LD   LP F K FYV+S S+  M   +   Y +   I V  R +PKPVR FR+
Sbjct:    7 RAADPGSYRDRRSEGAFGGG------TRAFAPTSKADSAAAAADLDG--LPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRD 95          

HSP 2 Score: 51.9878 bits (123), Expect = 5.637e-17
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1
Query:  433 MPEMTEADFWATTSMQAHRWPMAMKRHELVGTAATRSGRILAELLAATVHDIAEPL 600
            + E+T+A F   T +Q+  WPMA++  +L+G A T SG+ LA LL A VH  A+P+
Sbjct:  103 LQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPI 158          
BLAST of EY693116 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 48.9062 bits (115), Expect = 9.925e-11
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:  457 FWATTSMQAHRWPMAMKRHELVGTAATRSGRILAELLAATVHDIAEPLSG 606
            F   T +QA  WPMA+K  +L+G A T SG+ LA LL A VH  A+P  G
Sbjct:  185 FTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234          

HSP 2 Score: 38.891 bits (89), Expect = 9.925e-11
Identity = 23/68 (33.82%), Postives = 36/68 (52.94%), Query Frame = 3
Query:  231 GADSSKKLDHDRLPP--------FMKIFYVDSASMDAMYHRDTNEYIQHWLIAVVRRGIPKPVRIFRE 410
            G  S ++LD   LP         F K FYV+S ++ AM  +D   Y     I+V  R +PKP+++F++
Sbjct:  102 GGSSKRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQD 169          
The following BLAST results are available for this feature:
BLAST of EY693116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RH20_ARATH2.283e-2346.39DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
RH20_ORYSJ5.637e-1739.18DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
RH30_ARATH9.925e-1150.00DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-008-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693116 ID=EY693116; Name=EY693116; organism=Citrus sinensis; type=EST; length=942bp
TTCTCGACCCACGCGTCCGAGAATTCATTGTTTCCATATCATTACTAAAC
CGGCGATCGAATATCCTCATTCTGTGTATGGCAGTGACGGTGCTGACGCC
ATGATACGTTATGACAGATCGCTCCGCAGACAACAGCTCTTACCGTGACC
GGCGAATTGACTTAGGATTTGGTGGTGTTTTCACCTCTGACAACTAGGTC
CGTATCTACTCGAGCAAAATTGATTATGATGGTGCTGATTCCTCTAAGAA
GTTGGATCACGATAGATTGCCTCCCTTTATGAAGATCTTCTATGTTGATT
CAGCTTCAATGGATGCCATGTATCATAGGGATACCAATGAGTATATCCAG
CATTGGCTGATCGCAGTTGTACGTCGCGGTATCCCAAAACCTGTCAGGAT
TTTCCGTGAAGACTTGATTTCAATATTAGAGTATGCCAGAGATGACAGAA
GCTGATTTTTGGGCCACGACCTCTATGCAAGCTCACCGATGGCCAATGGC
TATGAAACGCCATGAACTCGTTGGCACTGCTGCGACACGGTCTGGAAGGA
TACTGGCTGAGCTGCTAGCGGCTACTGTCCATGACATTGCCGAGCCATTG
TCAGGTACTGNACAGAAGCTTATGGAGTTTATCTACCTCCGACTCTTCTA
CTGGCTATTCAAAACGACAAGACGATACTAAGCTCGTGTATCCTCAAAGA
TTAGAATTCGTTGATCTACTGCCGCATGGCCAAAGGACAAATAGATCTTA
GCTCCAAGAAAGTGTTTTTAATGTGTCGGCACCCCATGAGCGTAACTGAT
ATGCGGGAACACATAATCCTGTTTGTAACGTTACTGAACCTGTTTGGGGT
AAACTCAACGATGGTTGACATGTAGNTTGACCTTGATTACTATAGTCTTT
CTCCGACCTCTCGAGAGGCCAACTTATTTTGGAGTGCAATGG
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