EY693108

Overview
NameEY693108
Unique NameEY693108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.892e-90
Identity = 175/274 (63.87%), Postives = 212/274 (77.37%), Query Frame = 3
Query:   24 RFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSKYLEA*ILFRHL-*QHVTAEGTALVKLAEDAXSIRSRE----------RDVVALRSRFLSGRD*VHDNT*HM**LFQTHSL-HKSLKEALRL 809
            RFF+YLDRYFIARRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+EREGEQIDRALLKNVLDI+VEIGMGQM+ YE DFE+ ML+DT++YYSRKAS+WI EDSCPDYMLK+EECLK+E++RV+HYLHSSSEPKL+EKVQHELL V+A+QLLEKEHS C ALLRDDKV+DLSRM+RL+ K L       ++  QHVTAEG ALV+ AED  + +             R V+ L  +++           ++   FQ H+L HK+LKEA  +
Sbjct:  110 RFFYYLDRYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMV----------YVTECFQNHTLFHKALKEAFEI 373          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.141e-36
Identity = 73/181 (40.33%), Postives = 121/181 (66.85%), Query Frame = 3
Query:   36 YLDRYFIARRSLPPLNEVGLTCFRDLVY--TELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSK 572
            Y+DR ++ + +L  + ++GL  FRD V   + +  ++ + +++++ +EREGE IDR L+KN++ + +++G+   + Y  DFE  +L  T+++Y  ++   I   SCPDYM K E CLK E +RVSHYL SSSEPKL E  + +L+S +   L++ E+S   ++L+DDK+EDL RM+ LFS+
Sbjct:  120 YMDRNYVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVIDRILIKNIVQMLIDLGVNSKNVYIEDFEKPLLLKTSSHYQAQSQTLIQTCSCPDYMKKVEICLKEELERVSHYLDSSSEPKLKEVCEKQLISNHMRTLIDMENSGLISMLKDDKIEDLKRMYNLFSR 300          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.049e-23
Identity = 55/181 (30.39%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   36 YLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSK 572
            Y+DR ++ + ++  +  +GL  FRD V  Y  +   +R  ++ +I +ER+GE +DR  ++N   + + +G+     YE DFE   L+ +A ++  ++  ++ E+S   Y+ K E  +  E +RV H L  S+E  +++ V+ EL+S +   ++E E+S    +L++ K EDL+ M++LFS+
Sbjct:  125 YMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSR 305          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.049e-23
Identity = 55/181 (30.39%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   36 YLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSK 572
            Y+DR ++ + ++  +  +GL  FRD V  Y  +   +R  ++ +I +ER+GE +DR  ++N   + + +G+     YE DFE   L+ +A ++  ++  ++ E+S   Y+ K E  +  E +RV H L  S+E  +++ V+ EL+S +   ++E E+S    +L++ K EDL+ M++LFS+
Sbjct:  125 YMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSR 305          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.049e-23
Identity = 55/181 (30.39%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   36 YLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSK 572
            Y+DR ++ + ++  +  +GL  FRD V  Y  +   +R  ++ +I +ER+GE +DR  ++N   + + +G+     YE DFE   L+ +A ++  ++  ++ E+S   Y+ K E  +  E +RV H L  S+E  +++ V+ EL+S +   ++E E+S    +L++ K EDL+ M++LFS+
Sbjct:  125 YMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSR 305          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.049e-23
Identity = 55/181 (30.39%), Postives = 106/181 (58.56%), Query Frame = 3
Query:   36 YLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSK 572
            Y+DR ++ + ++  +  +GL  FRD V  Y  +   +R  ++ +I +ER+GE +DR  ++N   + + +G+     YE DFE   L+ +A ++  ++  ++ E+S   Y+ K E  +  E +RV H L  S+E  +++ V+ EL+S +   ++E E+S    +L++ K EDL+ M++LFS+
Sbjct:  125 YMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMYKLFSR 305          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.982e-23
Identity = 55/181 (30.39%), Postives = 105/181 (58.01%), Query Frame = 3
Query:   36 YLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSK 572
            Y+DR ++ + ++  +  +GL  FRD V  Y  +   +R  ++ +I +ER+GE +DR  ++N   + + +G+     YE DFE   L+ +A ++  ++  ++ E+S   Y+ K E  +  E +RV H L  S+E  +++ V+ EL+S +   ++E E+S    +L++ K EDL  M++LFS+
Sbjct:  125 YMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSR 305          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.513e-22
Identity = 69/224 (30.80%), Postives = 121/224 (54.02%), Query Frame = 3
Query:   36 YLDRYFI------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSKYLEA-*ILFRHL*QHVTAEGTALVKLAEDA 659
            YL+R+++       R+ +  +  + L  +RD ++  LN +V +AV+ LI++ER GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++ ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+  +    LE  H+    LL  DK EDL RM+ L S+  +    L + L  H+  +G A ++   +A
Sbjct:  139 YLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA 358          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.513e-22
Identity = 69/224 (30.80%), Postives = 121/224 (54.02%), Query Frame = 3
Query:   36 YLDRYFI------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSKYLEA-*ILFRHL*QHVTAEGTALVKLAEDA 659
            YL+R+++       R+ +  +  + L  +RD ++  LN +V +AV+ LI++ER GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++ ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+  +    LE  H+    LL  DK EDL RM+ L S+  +    L + L  H+  +G A ++   +A
Sbjct:  139 YLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA 358          
BLAST of EY693108 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.513e-22
Identity = 69/224 (30.80%), Postives = 121/224 (54.02%), Query Frame = 3
Query:   36 YLDRYFI------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSXCHALLRDDKVEDLSRMFRLFSKYLEA-*ILFRHL*QHVTAEGTALVKLAEDA 659
            YL+R+++       R+ +  +  + L  +RD ++  LN +V +AV+ LI++ER GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++ ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+  +    LE  H+    LL  DK EDL RM+ L S+  +    L + L  H+  +G A ++   +A
Sbjct:  139 YLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA 358          
The following BLAST results are available for this feature:
BLAST of EY693108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
CUL1_ARATH2.892e-9063.87Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL3_DICDI3.141e-3640.33Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_XENTR3.049e-2330.39Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3_MOUSE3.049e-2330.39Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3B_XENLA3.049e-2330.39Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA3.049e-2330.39Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_HUMAN3.982e-2330.39Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL1_PONAB1.513e-2230.80Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE1.513e-2230.80Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN1.513e-2230.80Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-H05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693108 ID=EY693108; Name=EY693108; organism=Citrus sinensis; type=EST; length=931bp
CCACGCGTCCGCCCACGCGTCCGCGATTCTTTCATTATCTTGATCGGTAC
TTTATAGCCCGGAGGTCACTGCCACCCCTTAATGAAGTTGGCCTTACCTG
TTTCCGTGATCTGGTGTACACGGAATTAAATGGAAAAGTTAGAGATGCTG
TAATTACTTTGATTGATCAAGAGCGTGAGGGTGAGCAGATCGATCGGGCG
TTGTTGAAGAATGTTTTAGATATTTTTGTTGAAATTGGGATGGGGCAAAT
GGATTACTATGAAAATGATTTTGAAACTGCCATGCTTAAAGATACTGCTG
CATATTATTCACGGAAAGCTTCAAACTGGATCTTAGAAGATTCCTGTCCA
GACTATATGTTAAAGGCTGAGGAGTGTCTGAAAAGGGAGAAAGATAGGGT
TTCTCATTACTTGCATTCTAGTAGTGAGCCAAAGTTACTAGAGAAAGTTC
AACATGAGTTATTGTCAGTATATGCAAATCAACTGCTTGAGAAAGAGCAC
TCANGATGCCATGCATTGCTCAGAGACGACAAGGTGGAGGATTTGTCAAG
AATGTTCAGGCTCTTTTCAAAATACCTCGAGGCTTAGATCCTGTTTCGAC
ATCTTTAGCAGCATGTTACTGCTGAAGGTACAGCCTTGGTGAAACTGGCT
GAAGATGCANCAAGCATAAGAAGCAGAGAAAGGGATGTGGTCGCTTTAAG
GAGCAGGTTTTTGTCAGGAAGGGATTGAGTGCATGACAATACTTAGCATA
TGTAATGATTGTTCCAGACCCACTCTCTCCATAAGTCTCTTAAGGAGGCT
TTGAGGCTTCTGCACAAGGTGGTGCTGGAAGCTCAGGCAAACTCCGGCCC
TTTCTGGATAATTCTTAAAAAGGGGGACCGGAACTTTGGTTAACCATTTA
AAAGCTTGAAAGGGGGGAATTCCTGATTTTA
back to top