EY693104

Overview
NameEY693104
Unique NameEY693104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_YEAST (Large subunit GTPase 1 OS=Saccharomyces cerevisiae GN=LSG1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.169e-41
Identity = 106/259 (40.93%), Postives = 148/259 (57.14%), Query Frame = 3
Query:   15 DDDERQAFLAWRRSLARLEE-NEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLE-GKAVSDTWRTQDTQQNID---DPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVXKKLTXHALVGQKRTGVTSTPGKPS-ISNIDISENWSSVTVLAWCPILL 773
            D  E++AFL WRR LA L+E NE L+LTPFE+N+++W+QLWRV+ERSDL+V +VDAR+PL +R  DLE Y +E D  K  LLLVNKADLL    R  WAKYF   +I F F+        LE  K + + +R QD ++      D + KV  + ++L+  Q E   +             K+  + +     G   P  + +G VGYPNV K  T ++LVG K+  V+STPGK      I +S++     +L  CP L+
Sbjct:  152 DRQEKEAFLEWRRKLAHLQESNEDLLLTPFERNIEVWKQLWRVVERSDLVVQIVDARNPLLFRSVDLERYVKESDDRKANLLLVNKADLLTKKQRIAWAKYFISKNISFTFYSALRANQLLEKQKEMGEDYREQDFEEADKEGFDADEKVMEKVKILSIDQLEELFL------------SKAPNEPLLPPLPGQ--PPLINIGLVGYPNVGKSSTINSLVGAKKVSVSSTPGKTKHFQTIKLSDS----VMLCDCPGLV 392          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_DROME (Large subunit GTPase 1 homolog OS=Drosophila melanogaster GN=ns3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.868e-40
Identity = 85/239 (35.56%), Postives = 138/239 (57.74%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEGKA---VSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSN----------VQSVDESFAG-NVAPKNVIVGFVGYPNVXKKLTXHALVGQKRTGVTSTPGK 698
            E +AFL WRR LA L+E+E++++TP+EKNL+ WRQLWRV+ERSD++V +VDAR+PL +R  DLE Y +E++  K  ++LVNK+DLL    R+ WA+YF    I   F+        L+ +A   +      Q  ++ +++ +  + S E+ L  ++ + + I + +        G  N          ++ +   + G     ++V VG VGYPNV K  T ++L+  K+  V++TPGK
Sbjct:  133 ENEAFLDWRRDLALLQEDEEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLERYVKEVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELKREAEECLDSFPEVQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQNDELPRLPGDKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGKSSTINSLMTVKKVSVSATPGK 371          

HSP 2 Score: 32.7278 bits (73), Expect = 1.868e-40
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  689 PRKTKHFQH*YL*K-LVLCDCPGLV 760
            P KTK FQ  +L K ++LCDCPGLV
Sbjct:  369 PGKTKRFQTLFLDKDILLCDCPGLV 393          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_DANRE (Large subunit GTPase 1 homolog OS=Danio rerio GN=lsg1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.702e-40
Identity = 99/269 (36.80%), Postives = 136/269 (50.56%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEGKAVSDTWRTQDTQQNIDD-----------PETKVYSREELLARLQYEAEEIVKMR------------RQAGCSSTGKSNVQSVDESF---AGNVAPKN-------------------VIVGFVGYPNVXKKLTXHALVGQKRTGVTSTPG 695
            E+ +FL WRR LARLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RCPDLE Y +E+  +K  +LL+NKADLL    R+ WA+YF+   I  VFW        LE +   +    Q+ Q + ++            E      EE     Q E EE    R             ++G     + N +S   S    +  +  KN                   + VG VGYPNV K  T + +   K+  V++TPG
Sbjct:  133 EKDSFLTWRRDLARLEEEQKLILTPFERNLDFWRQLWRVIERSDVVVQIVDARNPLLFRCPDLEKYVKEVSVHKVNMLLLNKADLLTREQRRAWARYFQKEGIRAVFWSALAEAQRLEAEERGEDAMDQEDQSDTEEETASKNATDHHEENSSSPNEEKDENEQDEEEEGEDERICVDESEWQTCSEESGDEDHAEENPESTATSSFYNSSRLLRKNELLEMFKSVHSGPTCKDGQITVGLVGYPNVGKSSTINTIFRNKKVSVSATPG 401          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_MOUSE (Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.752e-39
Identity = 98/274 (35.77%), Postives = 138/274 (50.36%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEG-------KAVSDTWRTQDTQQNIDD---PETKVYSREELLAR----LQYE-------------AEEIVKMRRQAGCSSTGKS-------NVQSVDESF----------------AGNVAPKNVIVGFVGYPNVXKKLTXHALVGQKRTGVTSTPG 695
            E+  FL WRR L RLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +EID  K  ++L+NKADLL    R  WA +F+   +  +FW        L G           DT +T+    ++D    P   + S  E  A      +YE             +EE      + GC++  ++       N Q  ++S+                   V    + VG VGYPNV K  T + ++G K+  V++TPG
Sbjct:  132 EKDNFLKWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILINKADLLTAEQRFAWAVHFEKEGVKVIFWSALAETDHLNGDLKEEVDSVAGDTNKTESESSSLDANEIPHRDLISLSEESASDSGDSKYEDCQEDEEEDWQTCSEEDSVPEEEEGCNADSETQNRKNAENQQVNNDSYLVSKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPG 405          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_SCHPO (Large subunit GTPase 1 OS=Schizosaccharomyces pombe GN=lsg1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.693e-39
Identity = 98/256 (38.28%), Postives = 145/256 (56.64%), Query Frame = 3
Query:   15 DDDERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNV--APKNVIVGFVGYPNVXKKLTXHALVGQKRTGVTSTPGKPS-ISNIDISENWSSVTVLAWCPILL 773
            D  ER++FL WRR+LA+L++ E  ++TPFE+NL++WRQLWRV+ERSD++V +VDAR+PLF+R   LE Y +E+   K+  LLVNKAD+L    R  W+ YF +++I F+F+              S     +  ++  D    +  S  E+   LQ +  ++   R      +T K  ++ + E FA  +      +  G VGYPNV K  T +ALVG K+  V+STPGK      I++SE  S    L  CP L+
Sbjct:  126 DRMERESFLNWRRNLAQLQDVEGFIVTPFERNLEIWRQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSKKNFLLVNKADMLTEEQRNYWSSYFNENNIPFLFF--------------SARMAAEANERGEDLETYESTSSNEIPESLQADENDVHSSR-----IATLKV-LEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKTKHFQTINLSEKVS----LLDCPGLV 357          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_HUMAN (Large subunit GTPase 1 homolog OS=Homo sapiens GN=LSG1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.175e-35
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEGKAVSDTWRTQDTQQN 425
            E+  FL WRR L RLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +E+D  K  ++L+NKADLL    R  WA YF+  D+  +FW        L G +  +  R  D Q N
Sbjct:  132 EKDNFLEWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEMDANKENVILINKADLLTAEQRSAWAMYFEKEDVKVIFWSALAGAIPLNGDSEEEANR-DDRQSN 264          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_MACFA (Large subunit GTPase 1 homolog OS=Macaca fascicularis GN=LSG1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.004e-35
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEGKAVSDTWRTQDTQQNIDDPETKVYSREEL 467
            E+  FL WRR L RLEE +KL+LT FE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +EID  K  ++L+NKADLL    R  WA YF+  D+  +FW        L G +  +     D Q N  + E   +   E+
Sbjct:  132 EKDNFLEWRRQLVRLEEEQKLILTSFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDASKENVILINKADLLTAEQRSAWATYFEKEDVKVIFWSALAGAIHLNGDSEEEA-NKDDRQSNTAEFEHSSFDEAEI 278          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_CHICK (Large subunit GTPase 1 homolog OS=Gallus gallus GN=LSG1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.697e-34
Identity = 68/147 (46.26%), Postives = 95/147 (64.63%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEGKAVSDTWRTQDTQQNIDDPETKVYSREE 464
            ER++FL WRR LA LEE +KL+LTPFE+NL+ WRQLWRV+ERSD++V +VDAR+PL +RC DLE+Y +E+   K  ++L+NKADLL    R  WA++F+   +  VFW        L G+             ++ D E +  S+EE
Sbjct:  123 ERESFLEWRRQLAHLEEEKKLILTPFERNLEFWRQLWRVIERSDIVVQIVDARNPLLFRCQDLESYVKEVSNDKENMILINKADLLSEEQRAAWAQFFEKEGVKVVFWSALAECRRLSGEV--KELDADSVADDLSDSEEESSSQEE 267          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_RAT (Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.100e-33
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEG 380
            E+  FL WRR L RLEE +KL+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y +EID  K  ++L+NKADLL    R  WA +F+   +  +FW        L G
Sbjct:  132 EKDNFLKWRRQLVRLEEEQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILINKADLLTAEQRVAWAVHFEKEGVKVIFWSALAETVHLNG 250          
BLAST of EY693104 vs. ExPASy Swiss-Prot
Match: LSG1_BOVIN (Large subunit GTPase 1 homolog OS=Bos taurus GN=LSG1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.199e-33
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 3
Query:   24 ERQAFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWXXXXXXXXLEGKAVSD 395
            E+  FL WRR L  LEE + L+LTPFE+NLD WRQLWRV+ERSD++V +VDAR+PL +RC DLE Y + ID  K  ++L+NKADLL    R  WA++FK  ++  +FW        L G +  D
Sbjct:  132 EKDNFLEWRRQLVWLEEEQNLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKTIDDNKENVILINKADLLTAEQRSAWAEFFKKENVKVIFWSALAEAIKLMGNSKGD 255          
The following BLAST results are available for this feature:
BLAST of EY693104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
LSG1_YEAST4.169e-4140.93Large subunit GTPase 1 OS=Saccharomyces cerevisiae... [more]
LSG1_DROME1.868e-4035.56Large subunit GTPase 1 homolog OS=Drosophila melan... [more]
LSG1_DANRE2.702e-4036.80Large subunit GTPase 1 homolog OS=Danio rerio GN=l... [more]
LSG1_MOUSE1.752e-3935.77Large subunit GTPase 1 homolog OS=Mus musculus GN=... [more]
LSG1_SCHPO8.693e-3938.28Large subunit GTPase 1 OS=Schizosaccharomyces pomb... [more]
LSG1_HUMAN1.175e-3551.49Large subunit GTPase 1 homolog OS=Homo sapiens GN=... [more]
LSG1_MACFA2.004e-3547.30Large subunit GTPase 1 homolog OS=Macaca fascicula... [more]
LSG1_CHICK1.697e-3446.26Large subunit GTPase 1 homolog OS=Gallus gallus GN... [more]
LSG1_RAT1.100e-3353.78Large subunit GTPase 1 homolog OS=Rattus norvegicu... [more]
LSG1_BOVIN3.199e-3350.81Large subunit GTPase 1 homolog OS=Bos taurus GN=LS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-H01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693104 ID=EY693104; Name=EY693104; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGAGAGATGATGATGAGAGACAAGCTTTTTTAGCTTGGCGG
CGGAGTCTTGCCAGGCTGGAGGAAAATGAGAAGCTTGTTCTTACTCCGTT
TGAGAAGAATTTGGATATGTGGAGACAGCTTTGGCGGGTTCTTGAACGTA
GTGACTTGATTGTGATGGTTGTTGATGCACGAGACCCCCTGTTCTACCGC
TGCCCTGATCTTGAGGCTTATGCACGAGAAATTGACAAGTATAAGAGAAC
ACTGCTTTTGGTGAACAAGGCAGATCTCTTACCATTTTCTGTCAGGAAAA
GATGGGCAAAGTACTTTAAGGATCATGATATCCTCTTTGTGTTCTGGTCA
GCTAAAGCTGCCTCTGCAGCTCTAGAGGGTAAAGCAGTCAGTGACACTTG
GAGGACACAGGATACCCAACAAAATATAGATGACCCTGAAACAAAAGTAT
ATAGCAGAGAAGAGCTTTTGGCCCGTTTGCAGTATGAGGCAGAAGAGATA
GTGAAAATGAGAAGGCAAGCAGGCTGCAGTAGCACAGGCAAATCAAATGT
TCAGTCTGTTGATGAAAGTTTTGCAGGAAATGTAGCACCTAAGAATGTAA
TTGTGGGATTTGTGGGGTATCCTAATGTANGGAAAAAGCTCACTATNCAT
GCTTTGGTCGGCCAGAAACGGACGGGTGTCACCTCTACCCCCGGAAAACC
AAGCATTTCCAACATTGATATCTCTGAAAATTGGTCCTCTGTGACTGTCC
TGGCTTGGTGTCCCATCCTTCTCATCTCTAGAATGATATGGTGCTTCTGG
AGTCTGCCTATGATCGATGACTGAACACGGCAGCTGTCAAGTTGTGGCCA
TCGCGTCCCAGAATGTCATGAGATGNCTACAAATNATCACAAANCCTACC
CTATGATCTCAGCTCGCCCT
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