EY693077

Overview
NameEY693077
Unique NameEY693077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY693077_ssr499 microsatellite EY693077_ssr499:499..508. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:579..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_BRANA (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.311e-75
Identity = 136/153 (88.89%), Postives = 142/153 (92.81%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 470
            EKMG KV+WTENSVTVTGP RD +G +HLRAVDVNMNKMPDVAMTLAVVALFADGPT IRDVASWRVKETERMIAICTELRKLGATVEEG DYCVITPP K+K A IDTYDDHRMAMAFSLAACADVPVTIKDP CTRKTFPDYF VL+S+TK
Sbjct:  363 EKMGCKVSWTENSVTVTGPSRDAFGMRHLRAVDVNMNKMPDVAMTLAVVALFADGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDYCVITPPAKVKPAEIDTYDDHRMAMAFSLAACADVPVTIKDPGCTRKTFPDYFQVLESITK 515          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_ARATH (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3)

HSP 1 Score: 281.567 bits (719), Expect = 3.311e-75
Identity = 133/153 (86.93%), Postives = 142/153 (92.81%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 470
            EKMG KV+WTENSVTVTGPPRD +G +HLRA+DVNMNKMPDVAMTLAVVALFADGPT IRDVASWRVKETERMIAICTELRKLGATVEEG DYCVITPP+K+K A IDTYDDHRMAMAFSLAACADVP+TI DP CTRKTFPDYF VL+ +TK
Sbjct:  367 EKMGCKVSWTENSVTVTGPPRDAFGMRHLRAIDVNMNKMPDVAMTLAVVALFADGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDYCVITPPKKVKTAEIDTYDDHRMAMAFSLAACADVPITINDPGCTRKTFPDYFQVLERITK 519          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_PETHY (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.647e-75
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 470
            EKMGA+VTWTENSVTV GPPR   GRKHLRA+DVNMNKMPDVAMTLAVVAL+ADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYC+ITPPEKL V  IDTYDDHRMAMAFSLAACADVPVTI DP CTRKTFP+YFDVL   +K
Sbjct:  363 EKMGAEVTWTENSVTVKGPPRSSSGRKHLRAIDVNMNKMPDVAMTLAVVALYADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPEKLNVTDIDTYDDHRMAMAFSLAACADVPVTINDPGCTRKTFPNYFDVLQQYSK 515          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA1_TOBAC (3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.154e-74
Identity = 135/153 (88.24%), Postives = 140/153 (91.50%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 470
            EKMGA+VTWTENSVTV GPPR+  G KHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATV EG DYC+ITPPEKL V  IDTYDDHRMAMAFSLAACADVPVTIKDP CTRKTFP+YFDVL   +K
Sbjct:  365 EKMGAEVTWTENSVTVKGPPRNSSGMKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVVEGSDYCIITPPEKLNVTEIDTYDDHRMAMAFSLAACADVPVTIKDPGCTRKTFPNYFDVLQQYSK 517          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA2_TOBAC (3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) OS=Nicotiana tabacum GN=EPSPS-2 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.065e-73
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 470
            E+MGA+VTWTENSVTV GPPR+    KHLRA+DVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYC+ITPPEKL V  IDTYDDHRMAMAFSLAACADVPVTI DP CTRKTFP+YFDVL   +K
Sbjct:  185 EQMGAEVTWTENSVTVKGPPRNSSAMKHLRAIDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPEKLNVTEIDTYDDHRMAMAFSLAACADVPVTINDPGCTRKTFPNYFDVLQQYSK 337          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_SOLLC (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.016e-73
Identity = 132/153 (86.27%), Postives = 139/153 (90.85%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 470
            EKMGA+VTWTENSVTV GPPR+  G KHLRA+DVNMNKMPDVAMTLAVVALFADGPT IRDVASWRVKETERMIAICTELRKLGATV EG DYC+ITPPEKL V  IDTYDDHRMAMAFSLAACADVPVTIK+P CTRKTFPDYF+VL   +K
Sbjct:  367 EKMGAEVTWTENSVTVKGPPRNSSGMKHLRAIDVNMNKMPDVAMTLAVVALFADGPTTIRDVASWRVKETERMIAICTELRKLGATVVEGSDYCIITPPEKLNVTEIDTYDDHRMAMAFSLAACADVPVTIKNPGCTRKTFPDYFEVLQKYSK 519          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_COLP3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=aroA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.663e-45
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVT 467
            EKMGA++ W + S+TV G P        L AVD++MN +PD AMT+A  ALFA G T IR++ +WRVKET+R+ A+ TELRK+GA V EG DY  ITPP+ LK A IDTY+DHR+AM FSL A +D PVTI DP CT KTFPDYFD L  V+
Sbjct:  282 EKMGAEIHWKDESITVIGKP--------LTAVDMDMNHIPDAAMTIATTALFATGTTTIRNIYNWRVKETDRLNAMATELRKVGAEVVEGKDYISITPPKSLKHAEIDTYNDHRVAMCFSLVALSDTPVTINDPKCTAKTFPDYFDKLAQVS 425          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_VIBCM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=aroA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.090e-45
Identity = 91/146 (62.33%), Postives = 107/146 (73.29%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFD 449
            EKMGA++ W ++ V           R  L AVD++ N +PD AMT+A  ALFA G TAIR+V +WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL  AAIDTYDDHRMAM FSL A +D PVTI DP CT KTFPDYFD
Sbjct:  282 EKMGAQIEWGDDYVIAR--------RGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFD 419          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_VIBCH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae GN=aroA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.090e-45
Identity = 91/146 (62.33%), Postives = 107/146 (73.29%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFD 449
            EKMGA++ W ++ V           R  L AVD++ N +PD AMT+A  ALFA G TAIR+V +WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL  AAIDTYDDHRMAM FSL A +D PVTI DP CT KTFPDYFD
Sbjct:  282 EKMGAQIEWGDDYVIAR--------RGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFD 419          
BLAST of EY693077 vs. ExPASy Swiss-Prot
Match: AROA_VIBC3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=aroA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.090e-45
Identity = 91/146 (62.33%), Postives = 107/146 (73.29%), Query Frame = 3
Query:   12 EKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFD 449
            EKMGA++ W ++ V           R  L AVD++ N +PD AMT+A  ALFA G TAIR+V +WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL  AAIDTYDDHRMAM FSL A +D PVTI DP CT KTFPDYFD
Sbjct:  282 EKMGAQIEWGDDYVIAR--------RGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFD 419          
The following BLAST results are available for this feature:
BLAST of EY693077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
AROA_BRANA3.311e-7588.893-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_ARATH3.311e-7586.933-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_PETHY5.647e-7588.243-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA1_TOBAC8.154e-7488.243-phosphoshikimate 1-carboxyvinyltransferase 1, ch... [more]
AROA2_TOBAC1.065e-7386.933-phosphoshikimate 1-carboxyvinyltransferase 2 (Fr... [more]
AROA_SOLLC9.016e-7386.273-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_COLP34.663e-4559.213-phosphoshikimate 1-carboxyvinyltransferase OS=Co... [more]
AROA_VIBCM6.090e-4562.333-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]
AROA_VIBCH6.090e-4562.333-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]
AROA_VIBC36.090e-4562.333-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-E07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693077 ID=EY693077; Name=EY693077; organism=Citrus sinensis; type=EST; length=765bp
CCACGCGTCCGGAGAAAATGGGTGCCAAAGTTACCTGGACTGAAAACAGT
GTAACTGTCACCGGACCACCACGAGATCCTTATGGAAGGAAACACTTGCG
TGCTGTAGATGTCAACATGAACAAGATGCCAGATGTTGCCATGACTCTAG
CTGTAGTTGCACTATTTGCTGATGGTCCCACTGCCATTAGGGATGTGGCA
AGTTGGAGAGTGAAAGAAACTGAAAGGATGATTGCTATTTGCACAGAACT
CAGAAAGTTGGGAGCAACAGTTGAAGAAGGACCAGACTACTGTGTGATCA
CCCCACCTGAGAAACTAAAAGTAGCAGCGATTGACACTTATGATGACCAC
CGGATGGCCATGGCATTCTCTCTAGCTGCTTGTGCTGATGTTCCAGTCAC
CATTAAGGATCCTAGTTGCACCAGGAAAACTTTCCCCGACTATTTCGATG
TGCTCGACAGTGTCACGAAGCGTTAAACAGCTCTTCCACATTTCTCATGA
GAGAGAGACTTCTCACCTCCATCAACCGACGAGAACAGCAAAACCACCCT
GTAACTTGCATGGCCTTGTAATTGCCAATAATTATGTGTAAGTTGAGCAT
GTTATTTTTACGAGGACCGAGTGTTTTTTGTTTTACAAATTTANGATGAG
TTTGTTTGGTCCTATCTTGTAAGATTAAATTTGAAATGAACTAATATTAC
TCCAGTGANGTCACTTCGACGTACCAATTAGTCATTGAACACNAGTATAA
AAAAAAAAAAAAGGG
back to top