EY692886

Overview
NameEY692886
Unique NameEY692886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692886_ssr742 microsatellite EY692886_ssr742:742..753. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4897 contig Csv1_Contig4897:42..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY692886 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.284e-22
Identity = 84/237 (35.44%), Postives = 126/237 (53.16%), Query Frame = 2 
Query:   29 TSNDEKSCANLQSTNAS-TAEPINSSKATESKVQ--TRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA-------ASVNSNGGSQSFPINVHQPG-SNGIHVPIQSW-GVVGHQVPGMMMPI---ADQQKYVQ------MRNSQLLYPAGNFVNLPTSSMYTQRPMAPINGAMNIGATRRPPASAVSSVTRT--QLGNGKDHDFSSLTRGMFTK 670
            T  D+ S A  QS  +  TAE I ++K  ES     +    EDLF  +P++    ++++ KDVK D+M+LF K+ +VSPF++ QQQ  + A       A+  + GG+   P  V+Q   +N ++V   +W    G+Q+PGM  P+   AD QK +Q        N++   P  N +  P+SS YT      +NG M   +T +P +S+ +  T T     +GKD DFSSL  GMFTK
Sbjct:  253 TPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNL---TTQQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGT---PNGVNQQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNG-MTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSSLMDGMFTK 482
The following BLAST results are available for this feature:
BLAST of EY692886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD5_ARATH4.284e-2235.44Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-E04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692886 ID=EY692886; Name=EY692886; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGGAGAAAATGATTCCAAGACTTCTAATGATGAGAAATCAT
GTGCCAATTTACAATCTACCAATGCTTCAACTGCTGAGCCAATTAATTCG
TCAAAGGCAACTGAAAGCAAGGTACAAACGAGATACAGAATTGAGGATCT
ATTTATGGGTTCACCATCAGTCATACCATCTGTTTCAGAGAAATCCCAGA
AAGATGTAAAGAATGATGTTATGAACCTCTTCGGAAAGTCTGAAATGGTG
TCTCCATTTTCTATCGATCAACAACAGTCTTTCCTTGCAGCTGCTTCTGT
AAATTCTAATGGTGGGTCTCAATCCTTTCCGATCAATGTACATCAACCTG
GTTCTAATGGCATTCACGTACCCATTCAGAGCTGGGGAGTTGTTGGCCAT
CAAGTTCCTGGAATGATGATGCCCATTGCTGATCAACAGAAATATGTGCA
GATGAGAAATAGCCAACTTTTGTATCCGGCTGGGAATTTTGTTAATCTTC
CGACATCCAGCATGTATACACAACGGCCAATGGCTCCAATTAACGGTGCA
ATGAATATTGGAGCTACGAGGCGTCCTCCAGCATCTGCAGTTTCCTCAGT
CACTCGTACTCAACTAGGAAATGGAAAAGATCATGATTTTTCATCTCTAA
CTCGAGGGATGTTTACAAAACAGTAACTGATTGTCAGAGAATGCTTTGTT
TTTCTTTAGTATGACAGAAATAGGTTTTTTTTTTTTTTAATAATAAATAA
ATAAGTGCATTCTTTGTTATTTTGGNTAGATAGCCTTTATTATTTTTCCT
ATTTATTTTGGGGTATTTATATTTATTCTATTGAAACTATGTGGCATTCA
TTTGTATCACAGGTTTTATACACATGGTATGATAAAAGTGAGTCTCAAAA
AAAAAAA
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