EY692715

Overview
NameEY692715
Unique NameEY692715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692715_ssr442 microsatellite EY692715_ssr442:442..453. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY692715 vs. ExPASy Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 49/121 (40.50%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  196 PSAGQRRPDQLQIQGPRPPPLSIHRDSHXXXXXXXXXXXXTEQ-QPHHHSERQQPVIIYSISPKVINVTVADFMTTVQRLT----GAXXXXXXXXXXXPAARIAVVEKVMDSPREKASSAA 543
            PS  Q +  QLQI GPRP PLS+H+DSH              + QP  +  R+ PV+IY++SPKV++ T ++FM  VQRLT    G            PAAR+A  E    SPR     AA
Sbjct:   12 PSDQQNQKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPRE-PVVIYAVSPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENA--SPRGGKEPAA 129
The following BLAST results are available for this feature:
BLAST of EY692715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MKS1_ARATH8.054e-1340.50Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-F07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692715 ID=EY692715; Name=EY692715; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGCCCACGCGTCCGGAAAATCATCTCTTTCGTTAAACCATT
CATTTCTGGAGCGGTAGAGATTTTTTTTTTTTCCCCATCTTAGCTCTCTC
TCAAGTCTCAAATCTCAATCATTTTTCATCTGTAAAATCACACCCCTGCA
CTTTTATATTTTCTCGATTTTGACCATATGGACTCGTCAAACTTGCCCAG
CGCGGGCCAGAGGAGACCGGATCAGCTGCAAATCCAAGGCCCCCGCCCTC
CGCCGCTAAGCATCCACAGAGACTCCCACAAGATCAAGAAACCACCAAAG
CCACCGCTGCCGCCGACGGAGCAGCAACCCCACCACCACAGCGAACGACA
GCAGCCGGTGATCATCTACTCCATCTCTCCCAAAGTCATCAACGTCACAG
TCGCCGACTTCATGACCACTGTCCAGCGCCTGACCGGTGCCTCTTCTTCT
TCTTCCGGCGACGGAGACGTTTCTCCAGCTGCGAGAATAGCGGTGGTGGA
GAAAGTCATGGACAGTCCCAGGGAGAAGGCCAGTTCCGCTGCTGTAATAA
ATAATGATTACGTGGTGGGAGAAACANAANATCAAGGAAGAGGAGAAGGG
GGCTGATTTTAAGTGGGTCGAGTTCCGGGGATACTGTCCCCGTCGACGTT
GCCGCCGCTTGTTCAAGAAAGTACTTCTCTCCACGGCGGCGTCGGCATCG
GGCGGGGCTGACCCCATTGGGTTATCTCGCAGGGGAATATGGGGTTCTTG
ATAACAGACATCTCCTTCGGGTTTGTCTCATCAGGTTTTTGGGCTCTCCT
GTTTATCTCCGAATTTTTTGGCAAATTGGAATTTTAGTATTCAAGCCCTT
CCNCCATCTAACATTAAGGATCTGGATCATTGCGGGGTGATGGAAAAAAA
AAAA
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