EY692696

Overview
NameEY692696
Unique NameEY692696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692696_ssr63 microsatellite EY692696_ssr63:63..80. BLAST: Citrus ESTs to Prunus persica proteins V1
EY692696_ssr506 microsatellite EY692696_ssr506:506..517. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY692696 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.948e-11
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:  167 QPAEKTAMPAVEKEA---PVTLPETDEASNKETETPKSSSGDDAESEQK--MPES-GSFKEESTRVGDLPDNEKKALDELKQVVQEALNKHEFS 430
            + A+ T  P  E  A   P T+ ET+ AS ++ E    +S  +   E+K  +P++ GSFKEES+++ DL ++EKK+LDELK +V+EAL+ H+F+
Sbjct:   51 ETADTTTKPEEETAAEHHPPTVTETETASTEKQEVKDEASQKEVAEEKKSMIPQNLGSFKEESSKLSDLSNSEKKSLDELKHLVREALDNHQFT 144
The following BLAST results are available for this feature:
BLAST of EY692696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PATL3_ARATH4.948e-1141.49Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692696 ID=EY692696; Name=EY692696; organism=Citrus sinensis; type=EST; length=977bp
CCACGCGTCCGCCATTATTCTTTATTTATTTGGTTGGGCTCTTAATTAGA
AATAATTAATATCAGCAGCAGCAGCAGCAGCAACTATGGCGGAGGAAGTT
CAAAAGACAGAGTCCCAAGAGACAGCTGCTCAAGTTGAAGAGGTGGTGGT
TCAAACTGATCATGTGCAGCCGGCTGAGAAGACTGCAATGCCGGCGGTAG
AGAAAGAGGCACCGGTGACATTGCCGGAGACTGATGAGGCTTCTAATAAA
GAGACTGAGACTCCGAAATCCAGCAGTGGTGACGATGCTGAGAGTGAGCA
GAAGATGCCCGAGTCTGGTTCTTTTAAGGAAGAAAGCACTAGAGTGGGTG
ATCTTCCGGATAATGAGAAGAAAGCGCTAGACGAGCTTAAGCAGGTTGTT
CAAGAAGCGCTTAACAAGCATGAGTTTAGTGCTAAAACAACACCAACACC
AGCACCGGCNGCNACAAAAGAAGAAGAAAAGAAAGAGACTGAGGCTGTGG
TGGCAGAGGAGGAGGAGAAGCCAGAGCAACCTTCGGAACCAACAAAGCCA
GAACCAGAAATTGCTGCTCAAGAAGAAAGGAAACTGAGGTTATTGAAGAA
AAGACAGCTCCAGAAAGTGCTGAAGCTGCANAAGATGATGGTGCCAAAAC
TGTAGAGGCCATAGAAGAGACAGTTGTAGCCGTATCATCTTCTGTTCCAC
AAGAGCAATTGCCTCNATCTCCAGAGCCAAAGCCTGAGGCAAAGCCTGCT
GTCACTTCAAAAATGAGTCAAAGGCACGACGACTGAACCCGAAATGGGGC
CTGAGAGNTTACATATGGGCATTTCCTCTCTGCTGTGAGAGAGCGATGTC
ATCTCTTGAGTTCTNCGNGCAAAAACTCAAGGTCAGATGCTTCACATGTT
CAGAACATATCATGGAAAAGGAATCGCTTGTTATTTATGGCAAATTGGTG
ACATTGACAAACGGGTCATCCCGTTTA
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