EY692639

Overview
NameEY692639
Unique NameEY692639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692639_ssr103 microsatellite EY692639_ssr103:103..123. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig2853 contig Csv1_Contig2853:160..1077. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.434e-73
Identity = 143/217 (65.90%), Postives = 159/217 (73.27%), Query Frame = 2
Query:   14 KNTATRLPLLL-SQRAAC---LHTTVPXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYWVTK 652
            +NTATRLPL+L S RAA    LHT++P                               G+SKTAEFVISK+DD++N+ RRGSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG+L LQKK+NRR+D  +W  K
Sbjct:    6 RNTATRLPLVLQSHRAAAVSHLHTSLPALSPATTPTSYTRPGPPSTSAPPP-------GLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWNK 215          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_ARATH (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.515e-72
Identity = 136/213 (63.85%), Postives = 151/213 (70.89%), Query Frame = 2
Query:   14 KNTATRLPLLLSQRAACLHTTVPXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYWVTK 652
            +NTATRLPLLL  + A    +V                                G+SK AEFVISK+DD++N+ R GSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG+L LQKK+NRR+D  +W  K
Sbjct:    6 RNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWNK 218          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_SOLTU (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.131e-70
Identity = 134/201 (66.67%), Postives = 147/201 (73.13%), Query Frame = 2
Query:   50 QRAACLHTTVPXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYWVTK 652
            QRAA +HTT+P                               GISK AE+VISK+DD++N+ RRGSIWPM+FGLACCAVEMMH GAARYD DRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGIL LQKK+NRR+DL  W T+
Sbjct:   19 QRAATIHTTLPSLSQQPAS------SPATSGGAQPPSMNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDLLMWWTQ 213          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.602e-64
Identity = 112/153 (73.20%), Postives = 129/153 (84.31%), Query Frame = 2
Query:  194 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYWVTK 652
            EF++SK+D++VN+ R+GS+WPM+FGLACCAVEMMH+ A+RYDLDRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWV+SMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG+L LQKK+ R R   YW+ K
Sbjct:   30 EFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRKTLYWLQK 182          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.762e-61
Identity = 108/154 (70.13%), Postives = 125/154 (81.17%), Query Frame = 2
Query:  182 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYW 643
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGIL LQ+K+ R R L  W
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIW 210          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.762e-61
Identity = 108/154 (70.13%), Postives = 125/154 (81.17%), Query Frame = 2
Query:  182 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYW 643
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGIL LQ+K+ R R L  W
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIW 210          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 4.762e-61
Identity = 108/154 (70.13%), Postives = 125/154 (81.17%), Query Frame = 2
Query:  182 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYW 643
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGIL LQ+K+ R R L  W
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIW 210          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.762e-61
Identity = 108/154 (70.13%), Postives = 125/154 (81.17%), Query Frame = 2
Query:  182 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYW 643
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGIL LQ+K+ R R L  W
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIW 210          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.219e-61
Identity = 107/154 (69.48%), Postives = 125/154 (81.17%), Query Frame = 2
Query:  182 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYW 643
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGIL LQ+K+ R R L  W
Sbjct:   57 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIW 210          
BLAST of EY692639 vs. ExPASy Swiss-Prot
Match: NDUS7_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.219e-61
Identity = 108/154 (70.13%), Postives = 125/154 (81.17%), Query Frame = 2
Query:  182 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILPLQKKMNRRRDLYYW 643
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R + L  W
Sbjct:   60 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLRIW 213          
The following BLAST results are available for this feature:
BLAST of EY692639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS7_BRAOL2.434e-7365.90NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_ARATH3.515e-7263.85NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_SOLTU1.131e-7066.67NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_RECAM4.602e-6473.20NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
NDUS7_PONPY4.762e-6170.13NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PANTR4.762e-6170.13NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_HUMAN4.762e-6170.13NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_GORGO4.762e-6170.13NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PONAB6.219e-6169.48NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_BOVIN6.219e-6170.13NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-G11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692639 ID=EY692639; Name=EY692639; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGCCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGC
AACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCC
GGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCC
ACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCG
TGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATC
TGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACAC
CGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCA
GCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAG
ATGGCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTG
GGTCATTTCTATGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACT
CTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTAT
GTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTACTCTATGGAATTCTCCC
ACTGCAGAAAAAGATGAACAGGCGCAGAGATTTGTATTATTGGGTGACAA
AGTGAGAAAAGCTCAAGTGGGCTCCTTGGCAGTTACACTCGACTATTATG
TACTAATAAAATCCACTATTTTATCTGGTGTCTGATGAAATGCCATGTAA
AGGGAGAGATATTTTCAGCTGTTTAGAACTACGNTCTGAGAGGGGCTATG
TGGTGCTACACCCATATTCATGAGNTGGATCTTTTGTCTCTGGCTTGCTA
CGCGGATCATGTCCTGTAAAATATTGAAGGCCGAACATTGTTTTTGGGTT
CCAAAAAAAAAAAAAAAAAAAA
back to top