FC922780

Overview
NameFC922780
Unique NameFC922780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC922780 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of FC922780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
UBIQ_WHEAT3.343e-1169.23Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR3.343e-1169.23Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN3.343e-1169.23Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU3.343e-1169.23Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.343e-1169.23Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.343e-1169.23Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.343e-1169.23Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.343e-1169.23Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.343e-1169.23Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE3.343e-1169.23Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BD07RM1 SLH Citrus sinensis cDNA clone KN0AAM1BD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922780 ID=FC922780; Name=FC922780; organism=Citrus sinensis; type=EST; length=570bp
TTTTTCTTCCATGAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACAA
GGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGAC
TCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCTT
CATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCCT
GACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACAA
TGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAGA
GGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCTC
CTGAGGTTTGACCTTTGAGAATGTATCTGGACGTGTATAAGCGTAGAAAA
TGTATCTGGACGTGTATAAGCGTAGAAAATGTATCTGGACGTGTATAAGC
GTAGAAAATGTATCTGGACGTGTATAAGCATTCGGATATGTGTTCGTTTG
CCAGTGAAATAATAATACCCTTCATTATCTGACTTGCAGTTTTTTAAAAA
AAAAAAAAAAAAAAAAAAAA
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