EY692574

Overview
NameEY692574
Unique NameEY692574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692574_ssr270 microsatellite EY692574_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692574 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.439e-76
Identity = 142/208 (68.27%), Postives = 162/208 (77.88%), Query Frame = 2
Query:   17 MKLRSQALRLSSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTXXXXXXXXXXXXXXXXXSFNYTPKPHPM 640
            +KL+SQ      PL S F+G  +VF +++    R SS+   I+AQT LRIG AQ+WWEKGL+ NMRE++SAQ+LV+SL+NAGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHKSMCYSL VHVLPFFRFYRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPT                 +F YTPKP P+
Sbjct:   43 LKLKSQ-----KPLRSVFYGKQIVFGDSQDESFRRSSA---ITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKELNFTYTPKPVPV 242          
BLAST of EY692574 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.709e-59
Identity = 112/192 (58.33%), Postives = 133/192 (69.27%), Query Frame = 2
Query:   50 SPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTXXXXXXXXXXXXXXXXXSFNYTP 625
            SP T     +G +    K IP         +  QT L IG+ Q+WWEK L+PNM+ V S QDLV SL NAGDKLVVVDFFSP CGGCKALHPKIC++AE NP+V+FLQVNYEEH+S+C SLN+HVLPFFRFYRG+ GRVCSFSCTNATI+KFK+AL KH  ++C +G T                 SF+Y P
Sbjct:   49 SPRTLISGENGNILFSKKKIPA-------FVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEKELVAMAANKDLSFDYKP 233          
BLAST of EY692574 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.299e-50
Identity = 98/173 (56.65%), Postives = 123/173 (71.10%), Query Frame = 2
Query:   41 RLSSPLTSDFHGHGVVFQE--NKAIPKRGSSSKFSISAQTG-LRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLG 550
            +LS  ++ D   H +   +  N+ +    SSS     A+T  + + +  RWWEK    NM E+ SA  LV+SL NAGD+LVV+DF+SPGCGGCK+LHPKICQLAE NP+V FL+VN EE ++MC+ LNVHVLPFF+FYRGA G+VCSFSCT ATI KFK AL KH  +RC LG
Sbjct:   28 KLSPFMSLDLKEHPMASADFTNQTLTAFSSSSASPFQAKTSSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLG 200          
BLAST of EY692574 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.267e-32
Identity = 66/160 (41.25%), Postives = 104/160 (65.00%), Query Frame = 2
Query:   47 SSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 526
            SS  TS   G+ V    N+++         S+  Q      +  +WWE+   PNM ++ SA+  + +L +AGD+LV+VDF+   CG C+A+ PK+C+ A+ +P++ FL+VN++E+KS+C SLNV VLP+F FYRGA G+V SFSC+ A  +K ++A+ +H
Sbjct:   50 SSLTTSSLIGNLVFSSRNQSL---------SVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERH 200          
BLAST of EY692574 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.237e-29
Identity = 63/152 (41.45%), Postives = 94/152 (61.84%), Query Frame = 2
Query:   47 SSPLTSDFHGHGVVFQENKAIPKRGSSSKFSISAQTGLRIGKAQRWWEKGLQPNMREVASAQDLVESLSNAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 502
            SSP  S  H H      +    +R  S    +     +   +  +WWE+   PNM ++ S ++ + +LS AG++LV+V+F+   C  C+AL PK+C+ A  +PD+ FL+VN++E+K MC SLNV VLPFF FYRGA G++ SFSC+ A +KK
Sbjct:   52 SSPSCSSSHYHPSSGLGSHLPLRRPKSQVVRVKVDENVAETEPPKWWERNA-PNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVKK 202          
The following BLAST results are available for this feature:
BLAST of EY692574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRXL1_ARATH2.439e-7668.27Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH2.709e-5958.33Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH2.299e-5056.65Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH1.267e-3241.25Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL6_ARATH2.237e-2941.45Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-B03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692574 ID=EY692574; Name=EY692574; organism=Citrus sinensis; type=EST; length=944bp
CCACGCGTCCGGCTAAATGAAATTGAGATCCCAGGCTCTGAGGCTCTCTT
CACCACTAACCAGTGATTTTCATGGACATGGAGTTGTTTTTCAAGAAAAT
AAAGCCATCCCCAAGAGAGGAAGCTCATCCAAGTTCTCCATTAGTGCACA
GACTGGCCTTAGAATTGGGAAGGCACAAAGGTGGTGGGAAAAGGGGCTGC
AACCAAACATGAGAGAGGTGGCTTCTGCACAAGATTTGGTGGAATCCCTT
TCGAATGCTGGGGATAAACTTGTTGTTGTTGATTTCTTCTCCCCTGGCTG
TGGTGGATGCAAAGCTCTCCATCCCAAGATATGTCAATTGGCAGAGATGA
ACCCAGATGTGCAGTTTCTTCAGGTTAATTATGAGGAGCACAAATCCATG
TGTTATAGCCTTAATGTTCATGTCCTGCCTTTTTTCCGGTTTTACAGAGG
GGCTCATGGCCGAGTATGCAGCTTTAGTTGCACTAATGCAACGATCAAGA
AATTTAAAGATGCGTTGGCTAAGCATACACCAGATCGATGCGGCCTTGGG
CCAACAAAGGGACTGGAGGAGAAAGAGCTCCTCGCATTGGCTGCTAACAA
AGATCTTTCCTTCAACTACACACCAAAACCACATCCAATGCCCGCTCCCT
GCAGAAAAGAGGTAGGATTGGCAGAAGTACCTCCACCTCACTCAATCCAA
ATCTACCATTACCTCTTTCCTCAACCTTGAAGTCCACTCAAGAGATTGAA
GACAAAACCTTGGTGTCAGCTGGGAGATGAAGGGAAAAGAATCGCAGGTA
TTGGATTATTTTTTTGGATCCTGGCCTGGATCATTCAGAGGTTTTAAGAC
ACCACCCTCAGGGTTGAAAGTGGGCTCTTTATTGTCCCCGGATTCTCCTA
TTGCGGTGGAGACGCCGGTTATCCTAAAGGTATGGATCCGGTTG
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