EY692538

Overview
NameEY692538
Unique NameEY692538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 5.798e-91
Identity = 160/178 (89.89%), Postives = 166/178 (93.26%), Query Frame = 2
Query:  143 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLFM 676
            MVTFRFHQYQVVGR LP+E DEHPKIYRMKLWATNEVRAKSKFWY LRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRD TLNGAVEQMY EMASRHRVR PCIQII+TATIPAKLCKRES+KQFHNS IKFPLV +K+ PP  +LKT YKASRPNLFM
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 3.758e-90
Identity = 158/178 (88.76%), Postives = 166/178 (93.26%), Query Frame = 2
Query:  143 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLFM 676
            M  FRFHQYQVVGRALPTEKD  PKIYRMKLWATNEVRAKSKFWY LRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRD TLNGAVEQMYTEMASRHRVR PCIQII+TAT+PAKLCKRESTKQFHNS IKFPLVF+KV PP  +LKTTYKA++PNLFM
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 9.256e-89
Identity = 155/175 (88.57%), Postives = 161/175 (92.00%), Query Frame = 2
Query:  152 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLFM 676
            FRFHQYQVVGRALPTE DEHPKIYRMKLW  NEV AKSKFWY +RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRD TLNG VEQMYTEMASRHRVR PCIQII+TAT+PAKLCKRE TKQFHNS IKFPLVF+KV PP  +LKTTYKAS+PNLFM
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 5.079e-87
Identity = 153/178 (85.96%), Postives = 162/178 (91.01%), Query Frame = 2
Query:  143 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLFM 676
            M  FRFHQYQVVGR LPT  DEHPKIYRMKLWATNEVRAKSKFWY LRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRD TLNGAVEQMYTEMASRHRVR PCIQII+TAT+  KLCKR++TKQFH S IKFPLV++KV PP  +LKTT+KASRPNLFM
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 9.364e-49
Identity = 93/171 (54.39%), Postives = 123/171 (71.93%), Query Frame = 2
Query:  161 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLF 673
            H++QVVGR +PTE+D +PKIYRM+L+A   + AKS+FWY L K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD+T  GAV QMY EMASRH  R   I II    I A L +R +TKQFH+S IKFPL  +       + K+T+ A+RPN F
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHRIA-----KSKSTFVANRPNTF 169          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.145e-46
Identity = 85/172 (49.42%), Postives = 126/172 (73.26%), Query Frame = 2
Query:  164 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLFMV 679
            +Y+V+GR LP+E +  P +Y+M++++ +++ AKS+FWY LR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD+++ GAV Q Y +M +RHR R+  IQII+   I A  C+R   KQFHNS I+FPL  K+V   H +   T+   RP+ + +
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPLP-KRVH--HHKRLNTFAYKRPSTYFL 177          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.550e-46
Identity = 86/170 (50.59%), Postives = 120/170 (70.59%), Query Frame = 2
Query:  164 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLF 673
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWY + +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD+T  GAV Q Y +M +RHR R+  IQI++   I A  C+R + KQFH+S IKFPL  + +   H   K  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQH---KPRFTTKRPNTF 175          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.550e-46
Identity = 86/170 (50.59%), Postives = 120/170 (70.59%), Query Frame = 2
Query:  164 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLF 673
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWY + +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD+T  GAV Q Y +M +RHR R+  IQI++   I A  C+R + KQFH+S IKFPL  + +   H   K  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQH---KPRFTTKRPNTF 175          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.350e-46
Identity = 86/170 (50.59%), Postives = 120/170 (70.59%), Query Frame = 2
Query:  164 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLF 673
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWY + +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD+T  GAV Q Y +M +RHR R+  IQI++   I A  C+R + KQFH+S IKFPL  + +   H   K  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQH---KPRFTTKRPNTF 175          
BLAST of EY692538 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.350e-46
Identity = 86/170 (50.59%), Postives = 120/170 (70.59%), Query Frame = 2
Query:  164 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYILRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDITLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSXIKFPLVFKKVXPPHEELKTTYKASRPNLF 673
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWY + +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD+T  GAV Q Y +M +RHR R+  IQI++   I A  C+R + KQFH+S IKFPL  + +   H   K  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQH---KPRFTTKRPNTF 175          
The following BLAST results are available for this feature:
BLAST of EY692538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA5.798e-9189.8960S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A2_ARATH3.758e-9088.7660S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH9.256e-8988.5760S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_ORYSJ5.079e-8785.9660S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DICDI9.364e-4954.3960S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_SPOFR1.145e-4649.4260S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_HUMAN2.550e-4650.5960S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN2.550e-4650.5960S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT4.350e-4650.5960S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE4.350e-4650.5960S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-G02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692538 ID=EY692538; Name=EY692538; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGCTTCTGAAAAAAAAAAAAAAGAAACAAATTGGACCAAGG
GTTTTGGCACCAAACCCTCAATGCAAAGCGCCGCATATAAACCCCGGTTC
CCCTCCTTCACCTGCAGTGAGCCAGCTCTCCTTGGAGGAAAAATGGTTAC
CTTCAGGTTTCACCAGTACCAGGTTGTGGGAAGAGCTTTGCCCACAGAAA
AGGATGAGCATCCCAAGATTTACAGAATGAAGCTCTGGGCCACCAACGAG
GTTCGTGCCAAATCCAAGTTCTGGTATATCTTGAGGAAGCTGAAGAAAGT
TAAGAAGAGTAATGGGCAGATGTTAGCAATCAATGAGATTTTTGAGAAGA
ATCCTACCAAAATTAAGAACTATGGAATCTGGTTGCGATATCAAAGCCGA
ACTGGGTATCACAATATGTACAAGGAATATCGAGACATTACTCTTAACGG
TGCTGTTGAGCAAATGTACACTGAGATGGCTTCTCGTCACCGAGTACGGT
CTCCATGCATTCAGATCATCAGGACAGCCACAATACCAGCCAAGCTCTGC
AAGAGAGAAAGCACAAAGCAGTTCCATAACTCCNAAATCAAGTTCCCTTT
AGTGTTCAAGAAAGTANGCCCCCCCCACGAGGAGCTCAAGACCACATATA
AGGCGTCAAGGCCCAACTTGTTCATGGTACCCTCTTAAATGGGCGTCAGT
GCTTTGCATTTTGCATTCTCTTTTTCCGGACACATACGACTGTCTTTTTT
AGGTTTTCATACATTTCTTTAACAGAATGGTTTCAAAACTGATTAGAACC
TCTGGTGAATTGTTCTAACTAATAAGATGCTCACCTCCTTTGAAAAACCG
GGACAATCTTTCAACTTTGGTCAATTCCTCAGGGGAAGGAATTTTAGGAA
GTTTGGGAGCTCCCGATAAAGTCCAAA
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