EY692527

Overview
NameEY692527
Unique NameEY692527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692527_ssr319 microsatellite EY692527_ssr319:319..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 3.152e-81
Identity = 159/253 (62.85%), Postives = 189/253 (74.70%), Query Frame = 3
Query:   99 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQAXXXXXXXXXXXXXXXXXXXXFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDEX*SXEXDEAAMKDEGIESEYFLGST 857
            ++NL NPE  S EEQNPLA   S  P A+LSL+     + P++T F++     LF+H PNKVK+PTQA                    FKST++ANPLQSPLS+ P RP+DP++ AA+RRA++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIESVS+LRKNL ARGS+LVVRVGKP   LV +AK IGADAVYAHREVSHDE  +    E AMK+EG+E +YF GST
Sbjct:    7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPNKVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGST 248          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.699e-26
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = 3
Query:  465 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDEX*SXEXDEAAMKDEGIESEYFLGST 857
            +VW+RNDLRVHD+E L +A +++  V+ +YCFDPR +GK+  GF+KTGP+RA FL+ESV+DLR++L   GSDL+VR G P + +  +   +   AV+ H EV+ +E       +AA+    +    F G+T
Sbjct:    7 LVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAALAPLNVPVRSFWGTT 137          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.758e-23
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDE 782
            +IVWFRNDLRV DNE++  A   S +VLPVYC DPR    S+   GF KTG  RA FLIE + DL++NL  +G DL++R GKP D L  +AK++ A  VYAH+E   +E
Sbjct:   86 AIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEE 194          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.296e-23
Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  465 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDEX*SXEXDEAAMKDEGIESEYFLGST 857
            +VWFRNDLR+HD+E L+ A    +++  VYC+DPR + ++  GF KTGP+R++FL +SV +L ++L   G+ L+V  G P   +  +AK I A  +Y HREV+ +E          +   GIE++ + GST
Sbjct:    9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGST 139          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.139e-22
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDE 782
            +IVWFRNDLRV DNE+L  A   S ++LPVYC DPR +G +   G  KTG  RA F+IE ++DL++NL  RG DL+++ GKP D +  +AK+  A  VYAH+E   +E
Sbjct:   80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEE 187          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.260e-21
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDE 782
            +I+WFRNDLRV DN++L  A + S ++LPVYC DPR +  +    F KTG  R  FL+E + DLRKNL  RG +L++R GKP + L  +AK  GA  V+AH+E   +E
Sbjct:   86 TILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEE 193          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21
Identity = 58/136 (42.65%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  456 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIG-ADAVYAHREVSHDEX*SXEXDEAAMKDEGIESEYFLGST 857
            R  I   RNDLR+HDNE L+ A+  +  ++P+YCFDPR Y G     F KTGP+R  FL+ESV DLR  L  +GS+L++R GKP + +  + K +G   AV  H E + +E       + A    GI+ + F GST
Sbjct:    6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRLGIKYQTFWGST 141          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  456 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYA-HREVSHDEX*SXEXDEAAMKDEGIESEYFLGST 857
            R  I   RNDLR+HDNE  + A   +  ++P+YCFDPR Y G     F KTGP+R  FL++SV DLR  L   GS L+VR GKP D +  + K +G+ +  A H EV+ +E    E  +       +  + F GST
Sbjct:    5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKEICCQNKVRVQTFWGST 140          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDEX*SXEXDEAAMKDEGI 830
            ++VWFR+DLRV DN +L  A   + +V+PVY FDP  Y +S  G  KTG +RA F  ++V+DLR +L  RG DL+VR G+P   +  +A+  GADAVYA  + + +E        +A+ D GI
Sbjct:    4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDDAGI 126          
BLAST of EY692527 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  462 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLXARGSDLVVRVGKPXDCLVXVAKSIGADAVYAHREVSHDEX*SXEXDEAAMKDEGIESEYFLGST 857
            ++VWFRNDLR  D+E    A+        V+C DPR +  +  GF +TGP+RA FLIE+++DLR  L + G +L+VRVG+P   L  +  S+  DAV+ H E   +E  + E  +      GI +    G T
Sbjct:    4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQHGIATHVAYGDT 134          
The following BLAST results are available for this feature:
BLAST of EY692527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PHR2_ARATH3.152e-8162.85Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_GLOVI1.699e-2644.27Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_ORYSJ1.758e-2353.21Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_SYNY32.296e-2340.46Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_SOLLC1.139e-2250.93Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_ARATH1.260e-2149.07Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_XENLA2.149e-2142.65Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_DANRE4.052e-2041.18Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_NATPD5.293e-2043.90Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]
CRYD_RHOBA9.028e-2038.64Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-F03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692527 ID=EY692527; Name=EY692527; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCGGACGCGTGGGGGCAGCTTATCTCCATCCAGTTCAGCT
GCAACACAATTTTCATCTTCCATCTTTAGGGTTGAAATGGATCCCAATAA
GCAAAATCTTGAAAACCCAGAAAACCATTCCAATGAGGAACAAAACCCAC
TTGCGACTATCCCTTCTCAATCACCATTTGCCACTCTTTCCCTCTCATTT
TCTCTCCCCCAAGTCCTCCCAGCCAACACTTTCTTCATTCAACCCAAAAT
TTCCACCTTATTTTCCCACCAACCAAACAAGGTCAAAGTCCCCACACAAG
CCTCTACGCTTACCCACATCTCTCTCTCCGCCTCCTCCACTCTCTCTCCT
TCCAAAATTTCATTCAAGTCCACACTCTCCGCAAACCCTCTTCAGAGCCC
TCTCTCTTTAGGGCCCCACCGCCCCTTGGACCCGAACAATGGGGCCGCAA
TTCGTCGAGCTTCCATTGTTTGGTTCCGCAACGACTTGCGGGTCCATGAT
AACGAATCTCTCAACACCGCCAATAACGAGAGCGTCTCTGTTTTGCCTGT
TTATTGTTTCGACCCGAGGGATTACGGCAAATCCTCTTCTGGCTTTGACA
AAACGGGGCCGTATCGGGCATCGTTTTTGATTGAGTCAGTTTCTGACCTT
CGCAAGAACTTGCANGCACGTGGGTCTGATCTCGTGGTGAGAGTGGGAAA
GCCNNGAGACTGTCTGGTCGANGTGGCTAAAAGCATTGGAGCTGATGCAG
TGTACGCGCACAGAGAAGTGTCACATGATGAGGNNTAATCNNGAGAGAAN
GATGAGGCAGCGATGAAAGACGAAGGAATTGAAAGTGAGTACTTTTTGGG
AAGCACTTGTACCATCTGATGATTTGCCGTTTAGGTGGGGGAAATGCGAC
TANTATGGTGGGTTTA
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