EY692520

Overview
NameEY692520
Unique NameEY692520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY692520 vs. ExPASy Swiss-Prot
Match: CSTF1_RAT (Cleavage stimulation factor 50 kDa subunit OS=Rattus norvegicus GN=Cstf1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.927e-24
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 3 
Query:   15 DTKGSSKSFPKLETRHLSEHKNIARCARFSPDGRFIATGSADTSIKLFEVAKIK-------QMMLPDSTDGPVR--PVIRTFYDHIQPINDLDFHPQNTVLISGGKDHTIKFFDFSKATAKRAFRVIQ 371
            D +  S    + ET +++ HK   R A +S DG+ IATGSAD SIK+ +  ++        ++M+ ++    +   PVIRT YDH+  +  L FHP   +L SG +D+T+K FD+SK +AKRAF+ IQ
Sbjct:   88 DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQ 215

HSP 2 Score: 34.6538 bits (78), Expect = 2.927e-24
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1 
Query:  475 QDTHNVRSVSFHPSGDFLLAGS 540
            Q+   +RS+SFHPSGDF+L G+
Sbjct:  215 QEAEMLRSISFHPSGDFILVGT 236
[Close]
BLAST of EY692520 vs. ExPASy Swiss-Prot
Match: CSTF1_PONAB (Cleavage stimulation factor 50 kDa subunit OS=Pongo abelii GN=CSTF1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.927e-24
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 3 
Query:   15 DTKGSSKSFPKLETRHLSEHKNIARCARFSPDGRFIATGSADTSIKLFEVAKIK-------QMMLPDSTDGPVR--PVIRTFYDHIQPINDLDFHPQNTVLISGGKDHTIKFFDFSKATAKRAFRVIQ 371
            D +  S    + ET +++ HK   R A +S DG+ IATGSAD SIK+ +  ++        ++M+ ++    +   PVIRT YDH+  +  L FHP   +L SG +D+T+K FD+SK +AKRAF+ IQ
Sbjct:   88 DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQ 215

HSP 2 Score: 34.6538 bits (78), Expect = 2.927e-24
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1 
Query:  475 QDTHNVRSVSFHPSGDFLLAGS 540
            Q+   +RS+SFHPSGDF+L G+
Sbjct:  215 QEAEMLRSISFHPSGDFILVGT 236
[Close]
BLAST of EY692520 vs. ExPASy Swiss-Prot
Match: CSTF1_MOUSE (Cleavage stimulation factor 50 kDa subunit OS=Mus musculus GN=Cstf1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.927e-24
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 3 
Query:   15 DTKGSSKSFPKLETRHLSEHKNIARCARFSPDGRFIATGSADTSIKLFEVAKIK-------QMMLPDSTDGPVR--PVIRTFYDHIQPINDLDFHPQNTVLISGGKDHTIKFFDFSKATAKRAFRVIQ 371
            D +  S    + ET +++ HK   R A +S DG+ IATGSAD SIK+ +  ++        ++M+ ++    +   PVIRT YDH+  +  L FHP   +L SG +D+T+K FD+SK +AKRAF+ IQ
Sbjct:   88 DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQ 215

HSP 2 Score: 34.6538 bits (78), Expect = 2.927e-24
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1 
Query:  475 QDTHNVRSVSFHPSGDFLLAGS 540
            Q+   +RS+SFHPSGDF+L G+
Sbjct:  215 QEAEMLRSISFHPSGDFILVGT 236
[Close]
BLAST of EY692520 vs. ExPASy Swiss-Prot
Match: CSTF1_HUMAN (Cleavage stimulation factor 50 kDa subunit OS=Homo sapiens GN=CSTF1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.927e-24
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 3 
Query:   15 DTKGSSKSFPKLETRHLSEHKNIARCARFSPDGRFIATGSADTSIKLFEVAKIK-------QMMLPDSTDGPVR--PVIRTFYDHIQPINDLDFHPQNTVLISGGKDHTIKFFDFSKATAKRAFRVIQ 371
            D +  S    + ET +++ HK   R A +S DG+ IATGSAD SIK+ +  ++        ++M+ ++    +   PVIRT YDH+  +  L FHP   +L SG +D+T+K FD+SK +AKRAF+ IQ
Sbjct:   88 DVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQ 215

HSP 2 Score: 34.6538 bits (78), Expect = 2.927e-24
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1 
Query:  475 QDTHNVRSVSFHPSGDFLLAGS 540
            Q+   +RS+SFHPSGDF+L G+
Sbjct:  215 QEAEMLRSISFHPSGDFILVGT 236
The following BLAST results are available for this feature:
BLAST of EY692520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CSTF1_RAT2.927e-2439.84Cleavage stimulation factor 50 kDa subunit OS=Ratt... [more]
CSTF1_PONAB2.927e-2439.84Cleavage stimulation factor 50 kDa subunit OS=Pong... [more]
CSTF1_MOUSE2.927e-2439.84Cleavage stimulation factor 50 kDa subunit OS=Mus ... [more]
CSTF1_HUMAN2.927e-2439.84Cleavage stimulation factor 50 kDa subunit OS=Homo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-E07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692520 ID=EY692520; Name=EY692520; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCAAGACACAAAAGGCTCGTCGAAGAGTTTTCCTAAGCTT
GAGACACGGCATCTTTCTGAGCACAAGAACATTGCCAGATGTGCAAGATT
TAGTCCTGATGGAAGATTTATTGCGACTGGAAGTGCAGACACATCAATCA
AGCTCTTTGAGGTCGCAAAAATCAAGCAAATGATGCTGCCAGATTCAACG
GATGGTCCTGTGCGGCCAGTCATACGGACTTTTTATGACCATATACAACC
TATAAATGATTTGGATTTCCATCCTCAAAACACTGTTCTGATATCTGGGG
GCAAGGATCACACAATAAAGTTCTTCGATTTTTCGAAAGCTACTGCAAAA
AGAGCATTCAGAGTTATCCAGGTTTTTCTTGTTATCTTGATGTACATTTA
ATCATGGATTTATGGTGTTGAACTGTAGATTTTATGACTACTTGTTTTAA
TGAATTTTTGTGTTTGTAATGAGACAGGATACTCACAATGTGCGTTCTGT
ATCATTTCATCCTTCTGGGGATTTCCTTCTTGCAGGTAGCTATTTCCTTT
GCGTTCTCCACTAAACCCTATAGGTATGCTGACTAACAGCCAAAAAAGTA
TCTAGGTAGTCAGTGGGATCTTTTTCTCTAATACCTTACAGAGGAATTGA
TAATTTCCCAGATGATTAGAAAGCTGGAAATCTCTTTTGGTAGTTTCATC
TGTCTTCCTGGCGGNTGTTAAATATATTCCTGACTGGTCCTCAATTAGTA
TGTAAGTAATGTGGTATTGCGTACACTCTGCTTATTCTGACGGTAAAATA
GAAGACTGTTATTAATTTATGTCTTTGCTGTATGACATAAATCTAGATGA
TACTATGCCAGCAGATCTTTTGTGAAACATTATCTCCTCATG
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