EY692352

Overview
NameEY692352
Unique NameEY692352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1061
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692352_ssr392 microsatellite EY692352_ssr392:392..403. BLAST: Citrus ESTs to Prunus persica proteins V1
EY692352_ssr481 microsatellite EY692352_ssr481:481..492. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692352 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.193e-29
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  105 TINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            T N+     Y    IDCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   30 TSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of EY692352 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 8.547e-28
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  111 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   27 NSQKKNGYAK-KIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of EY692352 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.179e-23
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  111 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of EY692352 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.716e-23
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  102 HTINSSK-GTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            H  + +K G G  K  IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   25 HAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of EY692352 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.269e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 3
Query:  117 SKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            S+G  +P+   DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
The following BLAST results are available for this feature:
BLAST of EY692352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SNAK2_SOLTU1.193e-2972.00Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH8.547e-2873.97Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH2.179e-2365.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH3.716e-2362.34Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GAST1_SOLLC7.269e-1145.07Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-059-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692352 ID=EY692352; Name=EY692352; organism=Citrus sinensis; type=EST; length=1061bp
CAGACACTAAGCATAACTAATTGTCATCCATGGCCATCTCCAAAGCTCTT
ATTGCTTCAGTCCTCCTCTCACTTGTTGTTTTTCATCTCGTTGAAGCTGA
GCATACGATTAACTCAAGCAAAGGAACTGGTTATCCAAAACCATCAATTG
ACTGTGGAGGTGCATGCCAGGCCAGGTGCCGATTATCGTCGAGGCCAAAC
CTGTGCCACAGGGCATGTGGTACCTGCTGCGCCCGCTGCAATTGTGTTCC
TCCAGGCACTGCAGGCAACACTGAGGTCTGCCCTTGCTACGCCAATATGA
CCACCCACCACGGCAGACGCAAGTGCCCTTGAAATATTTTAAGTTGAAAC
GACGTCGTCTACTTCTTAATTAATTTTTTTGGAGCTTCTATTCTCTCTCT
CTCTATGTATAAATATGTGCGTGTGCGTGTGCGTGTGTTGCCTGTGGCCA
GAAAAAACAGAGTTGATCCATATTCCCATGAATAAATAAATAAATCCATT
TCATGTTATACAAAGGTGATTATAAAAATTAAAGAAAATGACATTGAAAT
CAAATATAATGGACAGTTAACTACTTTCGTAGAACCAACATGAACAATTT
AATGTGTAGGAACGCACACAAACAAAAAAAATATAACGTGGAAAAAGTAA
AAGGGGGAGCCGCCCATAAAAGAAAAGAATTATTATAAAGGGTGGGTGAA
AGGAAAACAAATATACTTTAAAAATGAAACGATAACTAAAAACAAAACGG
CGAACAGTATTGTATGAATACTGGTGACAAAGGAGAAAATCCTTAGTGAA
TATCTTATATATATCTATCCTTGAATGCAAGTTATCCACTTTATCACAAA
GCGTGGATTAAAAATAGAAAAAAAAAACCGCTCAAGAAAACTCCCCATCA
CCTCTAACAAAACTTCTCACAGCTGTCTGAGAGCGGAAAGGAGAGAGGAC
TGCCATCGTGGACGATGATCGATCCGATATCACATCAAGAAACAATGGAG
GTTAGAGTAGTTGGTAGATTAATAAGAGGAACATGAATGAAAGAAATTCA
TATAAACAAAC
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