EY692305

Overview
NameEY692305
Unique NameEY692305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1064
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY692305 vs. ExPASy Swiss-Prot
Match: PAP8_ARATH (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 4.829e-55
Identity = 114/194 (58.76%), Postives = 137/194 (70.62%), Query Frame = 1 
Query:   70 HYSQPINASFSASLPCK----RSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLXXXXXXXXXXXXXXLQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVEFEPPKLKVGRIGSSKMGGRREVKL 639
            H S+ +N     S+P K    RS R  L +V +VS  + +LRTGPDDL++++LSKV  SDGGV+L              LQKYCV+ PVK PLIFG+W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL GKL ALD +W+QV FEPP++KVG +   K G   EVKL
Sbjct:   22 HSSRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAPNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSL-EFKYGFESEVKL 213
The following BLAST results are available for this feature:
BLAST of EY692305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP8_ARATH4.829e-5558.76Probable plastid-lipid-associated protein 8, chlor... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-023-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692305 ID=EY692305; Name=EY692305; organism=Citrus sinensis; type=EST; length=1064bp
CCACGCGTCCGGCTTTTTCTCTTACACTCTCATCCCCTTGTTACTAAACC
CCACACATTCTGCACAAGTCATTATTCACAACCCATAAACGCAAGTTTTT
CAGCTTCACTTCCTTGCAAAAGAAGTCCTCGCACCGCACTGAAAATCGTC
AGGGCTGTTTCCATCTCCAGCCCAGATCTGCGAACCGGTCCCGACGATTT
GGTTGCTTCTATCCTCTCCAAGGTGAACCAATCGGATGGAGGAGTTTCAC
TAGCCAAAGAAGAACACAAAGAGGTCGCTGAAGTTGCTCAAGAGTTGCAA
AAATATTGTGTTGAAGCACCAGTAAAATGCCCTCTAATCTTTGGAGAATG
GGATGTCGTGTACTGTTCAGTGCCAACTTCACCTGGGGGTGGCTACAGAA
GTGCATTTGGCCGTCTTTTCTTCAAAACAAAGGAAATGATTCAGGCTGTT
GAAGCTCCTGACACTGTTAGAAACAAGGTTTCCTTCACCGCTCTGGGTTT
TCTTGACGGAGAGGTCTCTTTGAAAGGAAAACTTAATGCTCTGGATGAGA
AATGGATTCAAGTTGAATTTGAACCACCAAAACTGAAAGTTGGAAGGATT
GGAAGTTCCAAAATGGGGGGTCGAAGGGAGGTTAAATTGCCATAATACAA
AGCATATATGAAAAAGATCTAGCAGGGGGTCAGAAGCCAAAAGGTTTCAT
AATATTGATAACAAAAAAGGCAAGGATAAGCATGAGAATGAAAAAAAAAA
AGAAGAATATTCAAAAATGAAAAAGCCGAATATAAAATGGTGACATTATA
ATAGATAATGAGAAAATCATATCATTCGAGAACTACGCAAACGATAAACT
ACGATTCATCGAGGCCAATATTCCCATACATGACAAAGGAAAATATACAC
TACTACTATGGAAAGTCAAAAAATCGAGTCAGAAGATAAAAAAATGAGAT
CGCAAAAATAAGATGAAACACTGAAAGACAATATAGAAGATAACATAAGA
AAAACAGTGAAAGTGAACAAAAAATATAAGACAAAGAACACAACATGTGA
TACATATCAATTCA
back to top