EY692221

Overview
NameEY692221
Unique NameEY692221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692221_ssr44 microsatellite EY692221_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.994e-37
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 2
Query:   65 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGVP 295
            MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGN EEY+DGQ +GNLGEILIRCNNVLY+RGVP
Sbjct:    1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 77          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.873e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 2
Query:   71 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 292
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.873e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 2
Query:   71 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 292
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.873e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 2
Query:   71 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 292
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.873e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 2
Query:   71 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 292
            ++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL N EEY+DG  SG+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_CAEEL (Probable small nuclear ribonucleoprotein F OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.108e-27
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 2
Query:   68 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 292
            A  PVNPKPFLN+LTGK V+ KLKWGMEYKG L +VDSYMNLQL +AEEY+DG   GNLGEILIRCNNVLY+ GV
Sbjct:    3 AVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGV 77          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_DROME (Small nuclear ribonucleoprotein F OS=Drosophila melanogaster GN=DebB PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.222e-27
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 2
Query:   68 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 292
            A +P+NPKPFLN LTGK V+VKLKWG EYKGFL SVD YMN+QL N EE ++G  +GNLGE+LIRCNNVLY++G+
Sbjct:    3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGM 77          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_SCHPO (Probable small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe GN=smf1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.267e-23
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 2
Query:   65 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 283
            M+ +PVNPKPFL  L GK V+V+LKWG EYKG L SVDSYMNLQL NAEE VDG  +G+LGEILIRCNNVL++
Sbjct:    1 MSFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNVLWV 73          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_DICDI (Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum GN=snrpf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   86 PKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGV 292
            PKPFL +L GK + V+LKWG MEY+G LASVDSYMNLQL   EE++DG   G LGE+LIRCNNVL++RG+
Sbjct:    9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIRCNNVLFVRGI 78          
BLAST of EY692221 vs. ExPASy Swiss-Prot
Match: RUXF_NEUCR (Probable small nuclear ribonucleoprotein F OS=Neurospora crassa GN=B2O8.190 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   65 MATIPVNPKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLR 286
            M+ +PVNP+PFL +L    V ++LKWG  EY G L S+DSYMN+QL + +EY++ +F+G LG++LIRCNNVLY++
Sbjct:    1 MSFVPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNNVLYIK 75          
The following BLAST results are available for this feature:
BLAST of EY692221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RUXF_ARATH9.994e-3793.51Probable small nuclear ribonucleoprotein F OS=Arab... [more]
RUXF_XENLA5.873e-2975.68Small nuclear ribonucleoprotein F OS=Xenopus laevi... [more]
RUXF_MOUSE5.873e-2975.68Small nuclear ribonucleoprotein F OS=Mus musculus ... [more]
RUXF_HUMAN5.873e-2975.68Small nuclear ribonucleoprotein F OS=Homo sapiens ... [more]
RUXF_BOVIN5.873e-2975.68Small nuclear ribonucleoprotein F OS=Bos taurus GN... [more]
RUXF_CAEEL1.108e-2777.33Probable small nuclear ribonucleoprotein F OS=Caen... [more]
RUXF_DROME3.222e-2770.67Small nuclear ribonucleoprotein F OS=Drosophila me... [more]
RUXF_SCHPO1.267e-2372.60Probable small nuclear ribonucleoprotein F OS=Schi... [more]
RUXF_DICDI1.713e-2067.14Small nuclear ribonucleoprotein F OS=Dictyostelium... [more]
RUXF_NEUCR9.397e-1954.67Probable small nuclear ribonucleoprotein F OS=Neur... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-098-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692221 ID=EY692221; Name=EY692221; organism=Citrus sinensis; type=EST; length=881bp
ACAGATCAAGATCATCAATAGAACACGCAGCGACAGCGTACTCTCCTTCC
TTCCTCGTCTTTCGATGGCTACGATACCGGTTAACCCGAAACCTTTCTTG
AATAACTTGACTGGAAAGACTGTCATTGTTAAACTCAAGTGGGGAATGGA
GTATAAAGGTTTCCTTGCCTCAGTGGATTCTTACATGAACTTGCAGCTAG
GAAATGCTGAAGAATATGTTGATGGACAGTTCTCTGGAAACCTTGGAGAG
ATCTTGATCAGATGCAACAATGTTCTCTATCTTCGCGGGGTTCCAGAGGA
TGAAGAAATAGAGGATGCTGATCGAGACTAAGGGATCTGTTCAAGCATTT
TAGTCATCGGCTAAATAGAACTCTGTTATTTTAAGCTTAAACCTGCTCCA
TTGTACTTGTATGTAAGTTTCAGATGATTTGTAATTTTACTGATATATTC
CCCATGCCTTTCATCGGGGCCTGACAAACAAATTGATTTCCCTTTGATAT
GAATTCTGGCGTTTGAATGCCCTGTACAAAAAAAAAACACAAAAAAAAAA
AAAAAAAATAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAATAACAACAT
AAAAAAAAAAAATAAATCAAGGGGGGGGCCCCTCCAAAAAAATCCAAACT
TTAAATACCCGGGGCTGGCAAACTCCAAATCCCTTTCTATAGGGGCCCCC
CAAAATAAAATTCCATGGGGCCGCCTTTTTTAAAAACTCTCGGGAAGGGG
AAAAAAACCCCTGGGGGTTTTCCCCAATTTTTAATCCCCCTTTGGACGCA
AACTCCCCCCCTTCCCCCCCGAGTGGGGGGGAAATAAAACAAAAAAAAGC
CCCCCCACCCCTTTCCCCCTCTTCCCCCAAA
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