EY692173

Overview
NameEY692173
Unique NameEY692173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RHOCS (50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.215e-32
Identity = 74/148 (50.00%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKPWRQKGTGRAR G+ R PQFRGGA + GP  RSH   L KKVR+L LK ALS +AAEGKL V E  +  +HKTK +      +  T   L+ DG  + E    A +N+ +++VLP  G NVY IL+ D LV++R+AV ++  R+
Sbjct:   59 TTKKPWRQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLFVLEAAKADTHKTKALAAQLKTLGLT-SALIIDGANLDETFVRAARNIPHLDVLPEQGANVYDILRRDVLVLTRNAVEQLEARL 205          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RHORT (50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.872e-32
Identity = 74/148 (50.00%), Postives = 101/148 (68.24%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T  KP++QKGTG AR G+ R PQFRGGAT+ GP  RSHA  LNKKVR+LGLK ALSA+A  G+L+V +     S KTK ++     +   +KVL  DG  ++EK  LA +N+  ++VLP  G NVY IL+ DTLV++++AV  + +R+
Sbjct:   59 TTAKPFKQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIVLDQAISESGKTKDLLAQLKVL-GLEKVLFIDGPEVNEKFALAARNIIGLDVLPQQGANVYDILRRDTLVLTKEAVKHLEERL 205          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_SPHWW (50S ribosomal protein L4 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.343e-31
Identity = 70/149 (46.98%), Postives = 97/149 (65.10%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRMH 447
            TGKK  RQKG G ARHG  R P F GG   HGP+ R     LNKKVR LGLK+ALS++A +GKL+V + LE+   KTK ++    ++      L+ DG  +    +LA+ N+H +NVLP++G NVY IL+H+TLV++R AV ++  R +
Sbjct:   59 TGKKFGRQKGGGTARHGDRRAPVFIGGGKAHGPRARVFESSLNKKVRALGLKMALSSKAKDGKLVVVDTLELKDAKTKALIAKIGKLGFGATALVIDGEAVDNGFQLASSNIHTINVLPAIGANVYDILKHETLVLTRAAVEKLEARFN 207          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RICBR (50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C) GN=rplD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 69/148 (46.62%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKP++QKGTG AR G+LR  Q RGG  +HGP  RSHA KL KKVR+LGL  ALS + +EGKLLV + L++ + KT  +VN  N+ +  K   + DG  +     LA QN++   V+P +G NVY I++H+ +++S++AVN + +R+
Sbjct:   60 TTKKPFKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLLVIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANVYDIIRHEYVLLSQEAVNVLEERL 206          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RICB8 (50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389) GN=rplD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 69/148 (46.62%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKP++QKGTG AR G+LR  Q RGG  +HGP  RSHA KL KKVR+LGL  ALS + +EGKLLV + L++ + KT  +VN  N+ +  K   + DG  +     LA QN++   V+P +G NVY I++H+ +++S++AVN + +R+
Sbjct:   60 TTKKPFKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLLVIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANVYDIIRHEYVLLSQEAVNVLEERL 206          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RICTY (50S ribosomal protein L4 OS=Rickettsia typhi GN=rplD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.991e-31
Identity = 67/148 (45.27%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKP++QKGTG AR G+LR  Q RGG   HGPK RSHAIKL KKVR+LGL  ALS + A GKLL+   L++   KT  +VN  N+ +  +   + DG  +     LAT+N++   ++P +G NVY I++H+ +++S++AV+ + +R+
Sbjct:   60 TTKKPFKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAAGKLLIINSLKLEKPKTSVLVNLLNKFQG-QSFFIIDGNKVDTNFSLATKNIYNTLIVPQIGANVYDIIRHEYVLLSQEAVSFLEERL 206          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RICRS (50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 68/148 (45.95%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKP++QKGTG AR G+LR  Q RGG   HGP+ RSHA KL KKVR+LGL  ALS + AEGKLLV + L++   KT  +VN  N+ +  K   + DG  +     LA +N++   V+P +G NVY I++H+ +++S++AV+ + +R+
Sbjct:   60 TTKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQIGANVYDIIRHEYVLLSQEAVSVLEERL 206          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RICRO (50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Iowa) GN=rplD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 68/148 (45.95%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKP++QKGTG AR G+LR  Q RGG   HGP+ RSHA KL KKVR+LGL  ALS + AEGKLLV + L++   KT  +VN  N+ +  K   + DG  +     LA +N++   V+P +G NVY I++H+ +++S++AV+ + +R+
Sbjct:   60 TTKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQIGANVYDIIRHEYVLLSQEAVSVLEERL 206          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RICPU (50S ribosomal protein L4 OS=Rickettsia peacockii (strain Rustic) GN=rplD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 67/148 (45.27%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKP++QKGTG AR G+LR  Q RGG   HGP+ RSHA KL KKVR+LGL  ALS + AEGKLLV + L++   KT  +VN  N+ +  K   + DG  +     LA +N++   ++P +G NVY I++H+ +++S++AV+ + +R+
Sbjct:   60 TTKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQIGANVYDIIRHEYVLLSQEAVSVLEERL 206          
BLAST of EY692173 vs. ExPASy Swiss-Prot
Match: RL4_RICFE (50S ribosomal protein L4 OS=Rickettsia felis GN=rplD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 67/148 (45.27%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 TGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVGLNVYSILQHDTLVMSRDAVNEIVDRM 444
            T KKP++QKGTG AR G+LR  Q RGG   HGP+ RSHA KL KKVR+LGL  ALS + AEGKLLV + L++   KT  +VN  N+ +  K   + DG  +     LA +N++   ++P +G NVY I++H+ +++S++AV+ + +R+
Sbjct:   60 TTKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLLVIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTVIVPQIGANVYDIIRHEYVLLSQEAVSVLEERL 206          
The following BLAST results are available for this feature:
BLAST of EY692173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_RHOCS1.215e-3250.0050S ribosomal protein L4 OS=Rhodospirillum centenu... [more]
RL4_RHORT7.872e-3250.0050S ribosomal protein L4 OS=Rhodospirillum rubrum ... [more]
RL4_SPHWW1.343e-3146.9850S ribosomal protein L4 OS=Sphingomonas wittichii... [more]
RL4_RICBR1.754e-3146.6250S ribosomal protein L4 OS=Rickettsia bellii (str... [more]
RL4_RICB81.754e-3146.6250S ribosomal protein L4 OS=Rickettsia bellii (str... [more]
RL4_RICTY2.991e-3145.2750S ribosomal protein L4 OS=Rickettsia typhi GN=rp... [more]
RL4_RICRS3.907e-3145.9550S ribosomal protein L4 OS=Rickettsia rickettsii ... [more]
RL4_RICRO3.907e-3145.9550S ribosomal protein L4 OS=Rickettsia rickettsii ... [more]
RL4_RICPU3.907e-3145.2750S ribosomal protein L4 OS=Rickettsia peacockii (... [more]
RL4_RICFE3.907e-3145.2750S ribosomal protein L4 OS=Rickettsia felis GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-G07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692173 ID=EY692173; Name=EY692173; organism=Citrus sinensis; type=EST; length=912bp
ACTGGAAAAAAGCCTTGGCGACAGAAGGGTACTGGTCGAGCTAGGCATGG
GACATTGCGTGGTCCCCAGTTCAGGGGTGGTGCTACAATGCACGGTCCAA
AGCCCAGAAGCCATGCTATAAAGTTGAACAAGAAGGTGCGGCGGCTTGGG
TTGAAGATTGCTCTATCTGCTCGAGCAGCCGAAGGAAAGCTCTTGGTTTT
TGAGGATTTGGAGGTCCCCTCACATAAAACCAAGTTCATTGTGAACTATT
ACAATCAAATGGAAAATACGAAGAAAGTTTTGCTGTGTGATGGTGGCTGC
ATACATGAAAAGCTGAAGCTGGCTACTCAAAATCTACATTATGTCAATGT
ACTACCTTCAGTTGGTTTGAATGTCTACAGCATCCTGCAGCACGACACAT
TGGTGATGTCTCGAGATGCTGTTAACGAAATTGTTGACCGAATGCACACG
CCAATCAATCGTTGAAACACTATCAATATATTTTGGCTGTAATCCTTATA
TCTTCCAAGAAAAAAAAGGAAAACTTCAATTTATCTTCAAAAGGAGAAGA
TAACCCCAAATAATTTTGGACTTTTTACAAGTTAAAATAAAGCGAAGGGG
ATGGCAAGAATACTCTTTTCGTAAATATCAACTTTGTGCCTTTAAAATAG
GAATATCTGAATATTAATTTTATGGCCGAGCCGCTTATACGAACTTCTTT
AAATCTGTTTATTAGCAAAAATGAAGAAGAAGCTATACTATATTCCTGAC
AAAATAACACAAATACAGGGTATGGAGGATATAGAGAAGAGAAAAAAGGG
ATTAAGGTAGCCAGGTAGTGAAAAGTATAGTATAGAACCTCTTGCTGATA
TGGAAAAATGAAACATTAATATAAAAACAGGCAGAGATACTACTTAACCT
CGCAGAGTAAAG
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