EY691805

Overview
NameEY691805
Unique NameEY691805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7050 contig Csv1_Contig7050:1082..1477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY691805 vs. ExPASy Swiss-Prot
Match: CRD1_GOSHI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 3
Query:   69 LDLLMNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 203
            + L+ NLKRIPLIAALASELLATYLMPP++SGSVDFAEFEP+LVY
Sbjct:  361 IPLVKNLKRIPLIAALASELLATYLMPPIESGSVDFAEFEPQLVY 405          
BLAST of EY691805 vs. ExPASy Swiss-Prot
Match: CRD1_HORVU (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.653e-13
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   33 DIRVDHASDQLTLDLLMNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 203
            ++++    +   L L+ NLKR+PLIA L SE++A YLMPP++SGSVDFAEFEP+LVY
Sbjct:  361 NLKIISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY 417          
BLAST of EY691805 vs. ExPASy Swiss-Prot
Match: CRD1_EUPES (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.653e-13
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 3
Query:   75 LLMNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 203
            ++ NLKR+PLIAAL SE+LA YLMPP++SGSVDFAEFEP+LVY
Sbjct:  363 VVKNLKRVPLIAALVSEILAAYLMPPIESGSVDFAEFEPKLVY 405          
BLAST of EY691805 vs. ExPASy Swiss-Prot
Match: CRD1_ARATH (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   78 LMNLKRIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 203
            +  LKRIPL+ +LASE+LA YLMPPV+SGSVDFAEFEP LVY
Sbjct:  368 IKTLKRIPLVTSLASEILAAYLMPPVESGSVDFAEFEPNLVY 409          
The following BLAST results are available for this feature:
BLAST of EY691805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CRD1_GOSHI4.972e-1584.44Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_HORVU4.653e-1357.89Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_EUPES4.653e-1376.74Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_ARATH5.145e-1276.19Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-032-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691805 ID=EY691805; Name=EY691805; organism=Citrus sinensis; type=EST; length=396bp
TTTTTCTTCCTACTTGCCCGCGGTCGGGTCGGGATATCCGGGTCGACCAC
GCGTCCGACCAGTTGACTCTGGATCTGTTGATGAACTTGAAGAGGATTCC
ACTGATTGCAGCACTGGCTTCTGAACTCCTTGCTACATATCTAATGCCAC
CAGTTGACTCTGGATCTGTTGATTTTGCTGAGTTTGAACCAGAGCTTGTT
TACTGATAATTTTGTAGAAAGTTCCAGTTGCCAAATCTTATGTTCATCTT
GAGTTTCTGTGAAACAAAAAAAAAAAAAAAAAAAGAATTCGGGCAGATGT
AACTGAGGATACATGAGTTTCTACTTTCTACCTTTTGTTTTTGTTTGTAA
TATCAGAACAATTTATTTCTTTGCAAAAAAAAAAAAAAAAAAAAAA
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